Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30068
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1231 + 28580006-28580934,28581810-28582086 31 1.0
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 31 1.0
01_01_0768 - 5935319-5935417,5935536-5935583,5935721-5935780,593... 29 3.1
10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314 29 4.1
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 29 4.1
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717... 28 5.4
02_01_0043 + 300122-300907,301447-301722,302347-302481 28 5.4
04_01_0067 - 673381-673387,675388-678131 28 7.2
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 27 9.5
>06_03_1231 + 28580006-28580934,28581810-28582086
Length = 401
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 350 PTESDKKEDVIKIENFYN-----DLQSTMESAHKNKIVMGDFNGQIGTQKNGEEYIIGR 511
P+E D V ENF D+ ST+ + N IV+GD+ + G + GEEY + R
Sbjct: 163 PSEIDPARQV-DWENFQQSSDIVDVLSTIHAQVPNGIVLGDYVIEYGDDETGEEYEVFR 220
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/65 (27%), Positives = 39/65 (60%)
Frame = +2
Query: 236 LADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTESDKKEDVIKIENFYNDLQS 415
L + +E L + +++ +L+ +++ K EE I+ S + S K+ED K++ YN+ ++
Sbjct: 251 LREKLEALDSLQDKVNLLSQEVNAK---EE--AIRELSSSLSSKEEDYQKLQLIYNETEA 305
Query: 416 TMESA 430
++E A
Sbjct: 306 SLEYA 310
>01_01_0768 -
5935319-5935417,5935536-5935583,5935721-5935780,
5935884-5935996,5936082-5936154,5936895-5936939,
5937020-5937133,5937227-5937253,5937963-5938247
Length = 287
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 257 LRGISERIAIL--NIKLSIKGKNEEWSIIQAYSPTESDKKEDVIKIENFYNDLQSTMESA 430
+R + + AIL N K + ++E+ +I+ T DKK + ++NF+ +L ES
Sbjct: 200 VRVLPSKTAILPVNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEDESL 259
Query: 431 H 433
H
Sbjct: 260 H 260
>10_08_0428 + 17842370-17842633,17842835-17842971,17843609-17844314
Length = 368
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = +2
Query: 164 GNYILHYIGETPGLYGVGFMVRKNLADNIEELRGIS---ERIAILNIKLSIKGKNEEWSI 334
G Y+LH +G+ L G+ +AD I+ L G+S + A +++ + G++ S
Sbjct: 65 GQYMLHRVGKLDTLAGIAIKYGVEVAD-IKRLNGLSTDLQMFAHKTLRIPLPGRHPP-ST 122
Query: 335 IQAYSPTESDKKE 373
Q E D +E
Sbjct: 123 YQQNGSYEGDDRE 135
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Frame = +2
Query: 140 FGEGIQDRGNYILHYIGETP------GLYGVGFMVRKNLADNIEEL 259
FG + G +IL YI T GLY GF RK DNI+ L
Sbjct: 1388 FGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFRFRKRDFDNIDRL 1433
>02_02_0581 +
11770511-11770527,11770754-11771612,11771652-11771749,
11772903-11773631,11775159-11775231,11775698-11776066,
11777009-11777038
Length = 724
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 269 SERIAILNI--KLSIKGKNEEWSIIQAYSPTESDKKEDVIKIENFYNDLQSTMESAHKNK 442
+E+ I+N KL GK + S+++ +S + D E+ +I++F N + T+
Sbjct: 505 TEKDEIINALRKLDWGGKLQGTSLLRKFSWCKRDGSEE--EIDSFLNSYRDTIYHG---- 558
Query: 443 IVMGDFNGQIGTQKNGEEYIIGRYGFGFRSKNG 541
M + NG NG+ YI+ + +G+ S G
Sbjct: 559 --MDECNG------NGKRYILWMFNYGYASITG 583
>02_01_0043 + 300122-300907,301447-301722,302347-302481
Length = 398
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 53 LRTSEKLKEFELAVKEIKWDIIGISEMRRFGEGIQDRGNY---ILHYIGETPGLYGVGFM 223
LR L + +K+I+ IS RR ++R + I+ + L G +M
Sbjct: 300 LRCLRHLAVAKAKLKDIRSLFYNISYRRRISHDSEERQRFADKIIALLATVDALEGPDYM 359
Query: 224 VRKNLADNIEELRGISE 274
VR +EEL G+ E
Sbjct: 360 VRNAKRSMLEELEGMLE 376
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 185 IGETPGLYG-VGFMVRKNLADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTES 361
IG L G V F V+K + +EEL+G+ + L KL IKG + S +A S E
Sbjct: 676 IGRLVNLQGSVEFHVKKGVGCTLEELKGLKD----LRGKLKIKGLDNVLS-KEAASKAEL 730
Query: 362 DKKEDVIKIENFYN 403
KK + ++ +N
Sbjct: 731 YKKRHLRELSLEWN 744
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +2
Query: 224 VRKNLADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTESDKKED 376
+R +L D+ EE I+ I ++I+ +I+ ++ W I++ T ++ KE+
Sbjct: 869 LRVDLEDHHEESSAITVCIGDVDIRYAIQELSDIWVIVKMVQITSNNLKEE 919
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,683
Number of Sequences: 37544
Number of extensions: 300675
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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