Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30068
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    96   2e-20
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    68   7e-12
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    64   8e-11
Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical p...    31   0.53 
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    29   2.1  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    27   8.6  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 60/188 (31%), Positives = 98/188 (52%), Gaps = 4/188 (2%)
 Frame = +2

Query: 35  TINCRSLRTSEKLKEFELAVKEIKWDIIGISEMRRFGEG---IQDRGNYILHYIGETPGL 205
           T NCRSL + ++L E     + I++D+IG+ E +R  E      D     L    E+   
Sbjct: 119 TFNCRSLSSDDRLAELLEETRRIQFDVIGLCETKRAAEAHLIHHDGTGVFLGKRNESSVS 178

Query: 206 YGVGFMVRKNLADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTESDKKEDVIK 385
            GVGF+VR  L   I E+R +S RI +L  K+S   +    ++IQ Y+PT     E++  
Sbjct: 179 GGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVS---RKFNCTVIQVYAPTADSDLEEIC- 234

Query: 386 IENFYNDLQSTM-ESAHKNKIVMGDFNGQIGTQKNGEEYIIGRYGFGFRSKNGTRISKLC 562
             +FY+ ++    E   K K+V+GDFN ++G ++N E Y IG +    R+  G  ++  C
Sbjct: 235 --DFYDSVEDVFRECRSKYKLVIGDFNARMGCRQNNERY-IGPHAMEPRNDTGELLATFC 291

Query: 563 N*KQIKHS 586
              ++ H+
Sbjct: 292 ETNRLWHT 299


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
 Frame = +2

Query: 209 GVGFMVRKNLADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTESDKKEDVIKI 388
           GVGF+V+  L   I E+  I  RI ++  K++ K K    ++IQ Y+PT     ++   I
Sbjct: 24  GVGFIVKSTLLPRITEVVFIDYRIGLITFKVNRKWK---CTVIQVYAPTAVSTLDE---I 77

Query: 389 ENFYNDLQSTMESAH-KNKIVMGDFNGQIGTQKNGEEYIIGRYGFGFRSKNGTRISKLCN 565
            +FY  L+ T  +   K K+++GDFN ++G +K+  E  IG +    R+  G  ++  C 
Sbjct: 78  SDFYEKLEDTYHACRSKYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILATFCE 137

Query: 566 *KQIKH 583
             ++ H
Sbjct: 138 SNRLWH 143


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
 Frame = +2

Query: 218 FMVRKNLADNIEELRGISERIAILNIKLSIKGKNEEWSIIQAYSPTESDKKEDVIKIENF 397
           ++VR  L   I E+R +S RI +L  K+S K      ++IQ Y+PT     E++    +F
Sbjct: 12  YVVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFN---CTVIQVYAPTADLDLEEIC---DF 65

Query: 398 YNDLQSTM-ESAHKNKIVMGDFNGQIGTQKNGEEYIIGRYGFGFRSKNGTRISKLCN*KQ 574
           Y+ ++    E   K K+V+GDFN ++G ++N E Y IG +    R+  G  ++  C   +
Sbjct: 66  YDSVEDVFRECRSKYKLVIGDFNARMGCRQNNERY-IGPHAMEPRNDTGELLTTFCETNR 124

Query: 575 IKHS 586
           + H+
Sbjct: 125 LWHT 128


>Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical
           protein Y57G11C.31 protein.
          Length = 404

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 559 KFTNPCAVFTSEAKSISSYDVFFSIFLCSYLTIEVAHDNFIFVS 428
           KF+ P A+F     +++  D F    LC+  T++ AH+ FIFV+
Sbjct: 94  KFSRPPAIFLLNQYALNMTDNF----LCNTATLDGAHERFIFVT 133


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = +2

Query: 71  LKEFELAVKEIKWDIIGISEM----RRFGEGIQDRGNYILHYIGETPGLYGVGFMV-RKN 235
           L   EL V+ I W I  I ++    +R GE    R    L  +  TPG++GV F + ++ 
Sbjct: 405 LSATELIVERIGWQIWKIPKVQRIRKRLGEHCCRRIMATLMLLTVTPGIFGVFFFLGQEG 464

Query: 236 LADNIEELRGISERIAILNIKLSI 307
           + + I +   +   + + +I +SI
Sbjct: 465 VGETISQNVVVQGVLDVFSINISI 488


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 PTESDKKEDVIKIENFYNDLQSTMESAHKNKIVM 451
           PTE DK ++ + I++ Y DL +     H+N  ++
Sbjct: 37  PTEGDKCDEEMTIDSIYCDLATNKTDTHENAFLI 70


>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 413 STMESAHKNKIVMGDFNGQIGTQKNGEEYIIGRYGFGFRSKNGTRISKLCN*KQIKHSE 589
           S +   HK   V  D     G ++N  EY     G  + +K   R  K CN KQ+K  E
Sbjct: 54  SFLNKRHKCDHVDADLGFGNGIEENQTEY-----GMQYPAKQAPRYLKTCNKKQLKFRE 107


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 344 YSPTESDKKEDVIKIENFYNDLQSTMESAHKNKIVMGD-FNGQIGT 478
           +S     K E   KIE  + DL +  + +H + +VM D F+G+ GT
Sbjct: 141 HSSVVVSKDEANNKIERTFGDLSTKKKYSHVDLVVMVDGFDGERGT 186


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 368 KEDVIKIENFYNDLQSTMESAHKNKIVMGDFNGQIGTQKN 487
           K+++ +  + Y +L+ ++E    NK+ + DF   + T+KN
Sbjct: 602 KQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKN 641


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 588 NSFYKKKTAEKMDVD 632
           NS+YKK++ EK+DVD
Sbjct: 593 NSYYKKESKEKVDVD 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,129,245
Number of Sequences: 27780
Number of extensions: 298173
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)