Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30068
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44080.1 68414.m05088 F-box protein-related / C-type lectin-r...    30   1.5  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    29   3.4  
At1g45688.1 68414.m05202 expressed protein                             29   3.4  
At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component bet...    28   4.5  
At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domai...    28   6.0  
At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domai...    28   6.0  
At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family pro...    27   7.9  

>At1g44080.1 68414.m05088 F-box protein-related / C-type
           lectin-related contains F-box domain Pfam:PF00646,
           PF00059: Lectin C-type domain
          Length = 347

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 284 ILNIKLSIKGKNEEWSIIQAYSPTESDKKEDVIKIENFYND--LQSTMESAH----KNKI 445
           I N ++S   KN   S +   + T SDK  D++K+E F +   LQ   +S       N  
Sbjct: 86  IKNRQVSESSKNNLLSPLSGKTITPSDKTLDLLKVECFRDSSILQLFADSDRVVFLDNVF 145

Query: 446 VMGDFNGQIGTQKNGEE 496
            + DF  +I   K+GEE
Sbjct: 146 FVVDFKNEIWCCKSGEE 162


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
            identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = +2

Query: 44   CRSLRTSEKLKEFELAVKEIKWDIIGISEMRRFGE-GIQDRGNYILHYIGETPGLYGVGF 220
            C+S   S K+K  +  V  ++  +  +   R   E  ++ +   I  Y+ +   L     
Sbjct: 858  CKSEEASVKIKRLDDEVNGLRQQVASLDSQRAELEIQLEKKSEEISEYLSQITNLKEEII 917

Query: 221  MVRKNLADNIEELRGISERIAILNIKLSIKGK 316
               K     +EE+ G+SE+I    ++L   GK
Sbjct: 918  NKVKVHESILEEINGLSEKIKGRELELETLGK 949


>At1g45688.1 68414.m05202 expressed protein
          Length = 342

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 83  ELAVKEIKWDIIGISEMRRFGEGIQDRGNYILHYIGETPGLYGVG 217
           +L+  +IK   IG   +++F +G +     ++H IGE   LYG G
Sbjct: 213 DLSFSQIK---IGSGSVKKFYQGRKSERTVLVHVIGEKIPLYGSG 254


>At1g30120.1 68414.m03681 pyruvate dehydrogenase E1 component beta
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 beta subunit [Arabidopsis thaliana] GI:2454184;
           identical to cDNA pyruvate dehydrogenase E1 beta subunit
           mRNA, nuclear gene encoding plastid protein GI:2454183
          Length = 406

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +2

Query: 53  LRTSEKLKEFELAVKEIKWDIIGISEMRRFG---EGIQDRGNYILHY--IGETPGLYGVG 217
           +R S+KL    +A KE         E+  F    EG+++  +   H   +GE  G YG  
Sbjct: 60  VRHSQKLIPNAVATKEADTSASTGHELLLFEALQEGLEEEMDRDPHVCVMGEDVGHYGGS 119

Query: 218 FMVRKNLADNIEELR 262
           + V K LAD   +LR
Sbjct: 120 YKVTKGLADKFGDLR 134


>At5g64940.2 68418.m08169 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 761

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 362 DKKEDVIKIENFYNDLQSTMESAHKNKIVMGDFNGQIGTQKNGE--EYIIG 508
           + +++ +KI   YN       +    K V GDFNG      NG   +Y+ G
Sbjct: 66  EDRDNAVKINGDYNGSARLNGNGSARKSVNGDFNGSARLNGNGSLVKYVNG 116


>At5g64940.1 68418.m08168 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 761

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 362 DKKEDVIKIENFYNDLQSTMESAHKNKIVMGDFNGQIGTQKNGE--EYIIG 508
           + +++ +KI   YN       +    K V GDFNG      NG   +Y+ G
Sbjct: 66  EDRDNAVKINGDYNGSARLNGNGSARKSVNGDFNGSARLNGNGSLVKYVNG 116


>At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 992

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 365 KKEDVIKIENFYNDLQSTMESAHKNKIVMG 454
           K + V+ +E + NDL ST +   KN I++G
Sbjct: 253 KFDKVLGVETYCNDLYSTYKGIAKNGIMVG 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,643
Number of Sequences: 28952
Number of extensions: 272472
Number of successful extensions: 683
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)