BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30067 (619 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 181 3e-46 At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 181 3e-46 At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 181 3e-46 At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 64 9e-11 At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 50 2e-06 At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 50 2e-06 At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 49 2e-06 At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 49 2e-06 At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 49 2e-06 At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.61 At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.4 At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 3.3 At3g62640.1 68416.m07036 expressed protein 28 5.7 At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 5.7 At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 7.5 At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 27 7.5 At1g28380.1 68414.m03487 expressed protein 27 7.5 At5g39880.1 68418.m04837 expressed protein 27 10.0 At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 27 10.0 At2g33100.1 68415.m04058 cellulose synthase family protein simil... 27 10.0 At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 10.0 >At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial identical to SP|P83484 ATP synthase beta chain 2, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; strong similarity to SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain; supporting cDNA gi|26452187|dbj|AK118582.1| Length = 556 Score = 181 bits (441), Expect = 3e-46 Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%) Frame = +3 Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386 DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154 Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566 +PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214 Query: 567 VDLLAPYAKGERLG 608 VDLLAPY +G ++G Sbjct: 215 VDLLAPYQRGGKIG 228 >At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial, putative strong similarity to SP|P83483 ATP synthase beta chain 1, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}, SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 559 Score = 181 bits (441), Expect = 3e-46 Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%) Frame = +3 Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386 DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157 Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566 +PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 217 Query: 567 VDLLAPYAKGERLG 608 VDLLAPY +G ++G Sbjct: 218 VDLLAPYQRGGKIG 231 >At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial identical to SP|P83483 ATP synthase beta chain 1, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}; strong similarity to SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain; supporting cDNA gi|26452102|dbj|AK118538.1| Length = 556 Score = 181 bits (441), Expect = 3e-46 Identities = 87/134 (64%), Positives = 107/134 (79%), Gaps = 2/134 (1%) Frame = +3 Query: 213 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 386 DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154 Query: 387 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 566 +PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214 Query: 567 VDLLAPYAKGERLG 608 VDLLAPY +G ++G Sbjct: 215 VDLLAPYQRGGKIG 228 >At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial, putative very strong similarity to SP|P23413 ATP synthase alpha chain, mitochondrial (EC 3.6.3.14) {Brassica campestris}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 777 Score = 63.7 bits (148), Expect = 9e-11 Identities = 30/103 (29%), Positives = 52/103 (50%) Frame = +3 Query: 294 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 473 +A +L V + G + G V +GS + +P G LGR+++ +G PID +G + Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393 Query: 474 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGER 602 + + +AP ++ E + TG+K VD L P +G+R Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQR 436 >At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 49.6 bits (113), Expect = 2e-06 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Frame = +3 Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485 GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI + Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122 Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 I + + + +E++ TGI +D++ A+G+++ Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 162 >At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative very strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 487 Score = 49.6 bits (113), Expect = 2e-06 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%) Frame = +3 Query: 309 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485 GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI + Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122 Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 I + + + +E++ TGI +D++ A+G+++ Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 162 >At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit identical to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana} Length = 486 Score = 49.2 bits (112), Expect = 2e-06 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Frame = +3 Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485 GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI + Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121 Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 I + + + +E++ TGI +D++ A+G+++ Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161 >At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 485 Score = 49.2 bits (112), Expect = 2e-06 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Frame = +3 Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485 GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI + Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121 Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 I + + + +E++ TGI +D++ A+G+++ Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161 >At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF02874: ATP synthase alpha/beta family beta-barrel domain Length = 330 Score = 49.2 bits (112), Expect = 2e-06 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Frame = +3 Query: 309 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 485 GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI + Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121 Query: 486 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 I + + + +E++ TGI +D++ A+G+++ Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 161 >At3g54040.1 68416.m05975 photoassimilate-responsive protein-related contains weak similarity to mRNA inducible by sucrose and salicylic acid expressed in sugar-accumulating tobacco plants (GI:871487) [Nicotiana tabacum] Length = 183 Score = 31.1 bits (67), Expect = 0.61 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 228 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 359 +NLP + + + R +LE A GE T RT A+D EG+V Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71 >At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN protein (ETT) identical to ETTIN GB:AF007788 from [Arabidopsis thaliana] Length = 608 Score = 29.9 bits (64), Expect = 1.4 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%) Frame = -2 Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 202 C+ P + LP+ RG + + PQGHLE + I LP H Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97 >At1g69410.1 68414.m07972 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative strong similarity to eukaryotic initiation factor 5A (2) (Nicotiana plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) {Lycopersicon esculentum} Length = 158 Score = 28.7 bits (61), Expect = 3.3 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = -3 Query: 458 VNRFADY--IDDASEGFSSHRDTNG*ARVEYRLPTD*AFSTVHGNG 327 VNR DY ID + +GF S NG + + +LPTD A T NG Sbjct: 85 VNR-VDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129 >At3g62640.1 68416.m07036 expressed protein Length = 110 Score = 27.9 bits (59), Expect = 5.7 Identities = 16/65 (24%), Positives = 27/65 (41%) Frame = -1 Query: 418 VSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 239 V T + P+S P P S + RT +P + T+R R T + + + Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86 Query: 238 GRLSS 224 G++ S Sbjct: 87 GKVKS 91 >At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase family protein similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200, SP|P70704], {Bos taurus} SP|Q29449; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase Length = 1184 Score = 27.9 bits (59), Expect = 5.7 Identities = 14/55 (25%), Positives = 25/55 (45%) Frame = +3 Query: 441 IGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGERL 605 + E + + G I +DKT + + EF+ S+ G+ V++ KG L Sbjct: 417 LNEELGQVGTILSDKTGTLTCNSMEFIKCSIAGTAYGRGVTEVEMAMDKRKGSAL 471 >At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains Pfam profile: PF02362 B3 DNA binding domain; identical to cDNA auxin response factor 4 (ARF4) GI:4102597 Length = 788 Score = 27.5 bits (58), Expect = 7.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 318 CSHPNVGLPQVRGGEIDFAPQGHLESEA 235 C+ P LP+ +G + + PQGHLE +A Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96 >At3g52640.1 68416.m05799 nicastrin-related contains weak similarity to Nicastrin precursor (Swiss-Prot:Q92542) [Homo sapiens] Length = 676 Score = 27.5 bits (58), Expect = 7.5 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = -3 Query: 572 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLV 480 ++DF T++ N H H+D L ++NSSS+V Sbjct: 421 LEDFDTNFVNKFYHSHLDDL--SNINSSSVV 449 >At1g28380.1 68414.m03487 expressed protein Length = 612 Score = 27.5 bits (58), Expect = 7.5 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -1 Query: 553 VTRISCCTDMSTN---SGASA*IAAVLSVGMGPRSSIGSP 443 VTR SC ++STN SG + I+ LS G+ P + P Sbjct: 498 VTRKSCWDNLSTNSRKSGVFSMISTRLSTGLSPNPATTKP 537 >At5g39880.1 68418.m04837 expressed protein Length = 363 Score = 27.1 bits (57), Expect = 10.0 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +1 Query: 121 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 240 LQ++P T T +LN +E++ + ++ MC +T L Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83 >At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 691 Score = 27.1 bits (57), Expect = 10.0 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = -1 Query: 454 IGSPI-TLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRR 278 +GSP+ TLM R S+ S+G KPSV S R + K + + Sbjct: 40 LGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDDAYKSHSGELSSP 99 Query: 277 GDRF-CTSRAFRIGGRLSSN 221 G T+R + G R SS+ Sbjct: 100 GSGMPTTTRILKPGHRRSSS 119 >At2g33100.1 68415.m04058 cellulose synthase family protein similar to gi:2827143 from Arabidopsis thaliana (Ath-B) Length = 1036 Score = 27.1 bits (57), Expect = 10.0 Identities = 14/44 (31%), Positives = 20/44 (45%) Frame = -1 Query: 400 IRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDR 269 ++ G P + PR P++A V S CW +T GDR Sbjct: 689 VKNGRPPGALLLPRPPLDAPTVAEAIAVIS--CWYEDNTEWGDR 730 >At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-containing protein contains Pfam domains PF00226: DnaJ domain and PF00096: Zinc finger, C2H2 type Length = 630 Score = 27.1 bits (57), Expect = 10.0 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Frame = -3 Query: 590 GIRSEQI-DDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTALVNRFADYIDDASE-- 420 GI E D+ +SY L L RH DKL + S + LV+ + + + D E Sbjct: 17 GISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAY-EVLSDPKERA 75 Query: 419 GFSSHR 402 + SHR Sbjct: 76 WYDSHR 81 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,157,569 Number of Sequences: 28952 Number of extensions: 298807 Number of successful extensions: 806 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 806 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1246162608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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