Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30066
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 6e-07
SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 29 2.1
SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18) 29 2.8
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0) 28 4.9
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08) 27 8.5
>SB_13925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/89 (35%), Positives = 50/89 (56%)
Frame = +2
Query: 257 LYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAA 436
++D GKRY+D V+ GHCHP++ AL+DQ +L T+ + + + E+ ++
Sbjct: 1 MWDVTGKRYIDFLAAYSAVNQGHCHPRIVKALQDQAGILSLTSRAFYNDVLGEF-QEFVT 59
Query: 437 KLPGDLNVVYLVNSGSEANELATLLAKAY 523
KL G + V VNSG E E A LA+ +
Sbjct: 60 KLCG-YDKVLPVNSGVEGGETACKLARKW 87
>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 51.2 bits (117), Expect = 6e-07
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +2
Query: 101 STAKMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYD 265
ST +MPP D+ P PY G S+ + +Q++ Y+ P++ YK P+ + +W+ D
Sbjct: 31 STLEMPPCDYKPEPYKGMSFDKAKQIRQTYLNPALLAYYKDPIFIWAVITKWIQD 85
>SB_24775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 254 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQL 364
++ D D KRY+D G + +GH HP+V A+++QL
Sbjct: 43 YVTDEDDKRYVDYVGSWGPMILGHSHPEVLDAVRNQL 79
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 51 KWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK 167
KWL ++N A SS T K + S PD T+ NK
Sbjct: 716 KWLQSQKNQAPNSSSETKDSKWPQAPSIPDNTQTNEPNK 754
>SB_18548| Best HMM Match : Peptidase_A17 (HMM E-Value=1.6e-18)
Length = 550
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 473 SLNIPRSNPPGA*RLIVRRTHRFSDVCTGWSYATI 369
SL+IPR PPG R++ H F+D Y +
Sbjct: 418 SLHIPRCFPPGFGRMVRTDIHHFADASQDNGYGAV 452
>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 431
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 254 WLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKD 358
++ D DG LD++ I ++ +G+ HP + A++D
Sbjct: 157 YVVDADGNVMLDVYQQIASIPLGYNHPALLKAMQD 191
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 33 QQRNTSKWLIEEQNYASTSSERTARPKCRRRISCPDRTRDLRTNK*NK*KEFTCRLQ 203
++ L+EEQ S S T R C S +RT D N+ KE C+L+
Sbjct: 1355 EEMKNESMLVEEQLNESQSELETTRESCTSMNSDLERTCDELQIAQNELKELRCQLE 1411
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 227 VLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPK 337
VLLT G Q L KR D IV+V VG C+ K
Sbjct: 4068 VLLTDGQSQDLVFTAAKRLRDAGVTIVSVGVGCCYSK 4104
>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
Length = 467
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 296 GGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLV 472
GGIVT + G CH N+ + + D L + + H K+ + Q + G++ +YLV
Sbjct: 166 GGIVTPNDGQCHLS-NSGVYTKSDELDYPSIAQLHEKLLQKQIQPIFAVTGNVTDLYLV 223
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 145 HGTFVPTSRTNERSLHAAFNHERL*EAGASHPGAHAVVIRQRRQEIPGSVRWNRHRLRGP 324
HG + PT T+ L+A+ + AG+ HP HAV + +P + W LR P
Sbjct: 495 HGMY-PTVPTSSALLNASA--VPVPGAGSPHPHYHAVQGANGQYSVPCNCTWQPQDLRRP 551
Query: 325 LS 330
++
Sbjct: 552 VA 553
>SB_5388| Best HMM Match : PH (HMM E-Value=2.5e-08)
Length = 293
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 116 PPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKPVLLTQGH 247
PPT + P+PY Y Q +G Y P AY +P QG+
Sbjct: 154 PPTSYPPQPYPAQPYPQ----QG-YPPQPPPQAYPQPGYPPQGY 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,112,687
Number of Sequences: 59808
Number of extensions: 495261
Number of successful extensions: 1358
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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