Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30065
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.16 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.48 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    28   1.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   2.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.0  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.6  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    26   4.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   4.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.0  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 276 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 419
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +3

Query: 249 TMQVKHQRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 395
           T  VKH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 737 TPAVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +3

Query: 294 SPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLV 473
           SP +   +PV P QPL  L  + T   P +  +   L++PS+   D     + NSS  + 
Sbjct: 281 SPFF--TAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNSNSSSIVQ 338

Query: 474 N 476
           N
Sbjct: 339 N 339


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 1/146 (0%)
 Frame = +3

Query: 120 HATLMMEKLVP*SHVHGTTSMTPTKASPSSTFKRS*RTWPARATMQVKHQRWPKPPELSP 299
           H       + P  H   + S T T +S  S       T P    +    +  P+PP  SP
Sbjct: 259 HGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSP 318

Query: 300 IYLPVSPVMPVQPLTSLTLT-QTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVN 476
              PVS +  +    ++ L+ + A   +   ++ N+  P S         S   + T  +
Sbjct: 319 SKKPVSELEELHTAGNVNLSARRALFEKKESSTKNVENPVSHHLKSPVRTSFPPASTTAS 378

Query: 477 SDTLSDQPWVVPEVEESMTSKPLGMQ 554
                D P  VP V++  T+KP+  Q
Sbjct: 379 K---QDSPSTVP-VDKQETAKPINKQ 400


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +3

Query: 342 TSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDTLSDQPWVVPEVE 521
           T+LT   T SG ET P +  +  PS      T  +  + SLT   + T S  P V   VE
Sbjct: 722 TTLTSIVTHSGSETGPTTVYIETPSVSATTTTTTIGYSGSLT--TTLTGSSGPVVTNTVE 779


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 95  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEI-LKDMASQGDYASQ 262
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +SQ
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQ 59


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +3

Query: 390 ASDNLSVPSS-DTWDKT*ILSINSSLTLVNSDTLSDQPWVVPEVEESMTSK 539
           A   ++VPSS D W    I  +  S+  V++D L    W++ EVE   TS+
Sbjct: 18  AGMEINVPSSSDVWTSGHIEPLEWSV--VSTDPLQANVWLINEVEYPPTSR 66


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +2

Query: 65  SAYAAPSVTINQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSIAILNVQEILKDMASQ 244
           S   +PSV+I     +EIP  +       + + A DY+  T     I++V  ++  + S 
Sbjct: 80  SVEISPSVSIQNRETDEIPSFLTSALQDLLNALAVDYLKFTPSKAWIIHVDAVV--ILSS 137

Query: 245 GDYASQASAVAQTA 286
             Y +  SA++  A
Sbjct: 138 SPYENILSALSLAA 151


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 324 MPVQPLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLT 467
           +P Q +++L  +   S P  S  S + S+PSS   D   + S   SLT
Sbjct: 135 LPSQEISTLLSSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPSLT 182


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 336 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDT 485
           PLTS   T + S   T+P+ +  SV  + +   T + S NS+     S T
Sbjct: 390 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 439



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 336 PLTSLTLTQTASGPETSPASDNLSVPSSDTWDKT*ILSINSSLTLVNSDT 485
           PLTS   T + S   T+P+ +  SV  + +   T + S NS+     S T
Sbjct: 504 PLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASST 553


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,138
Number of Sequences: 5004
Number of extensions: 55366
Number of successful extensions: 213
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)