Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30064
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 61 1e-10
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 59 4e-10
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 29 0.40
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.8
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 2.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 3.7
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 4.9
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 4.9
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo... 25 6.4
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 61.3 bits (142), Expect = 1e-10
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +2
Query: 140 LKSLVPGTKSVIGKDSGAQADIHLLDGDLVRFGSHELLAAATPGHTNGCLTYICHEQS-- 313
LK P G D + + L D + +R G+ ++ A TP HT + + H +
Sbjct: 75 LKKEFPHVTIYGGSDQNGVSHV-LQDKETLRIGNVQIEALHTPCHTRDSICFYAHSSNEH 133
Query: 314 LAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPDEYVLYPAHDY 460
FTGDTL GCGR F EG + ++ +++ + +LP+ V+YP H+Y
Sbjct: 134 AVFTGDTLFNAGCGR--FFEGTAAEMHIALNAVLSSLPNNTVIYPGHEY 180
>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 256
Score = 59.3 bits (137), Expect = 4e-10
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Frame = +2
Query: 215 DGDLVRFGSHELLAAATPGHTNGCLTYICHEQS--LAFTGDTLLIRGCGRTDFQEGNSET 388
D ++ + G ++ A TP HT + Y S FTGDTL GCGR F EG+++
Sbjct: 99 DKEIFKVGEVQVEALHTPCHTQDSICYYVSSPSKRAVFTGDTLFTSGCGR--FFEGDAKQ 156
Query: 389 LYKSVHNRIFTLPDEYVLYPAHDYRGQTATSVAEEKKYNPRLTKSLAEF 535
+ ++++ + LPD+ V YP H+Y A + P LTK L +F
Sbjct: 157 MDYALNHVLAALPDDTVTYPGHEYTKSNA-KFSSTIFSTPELTK-LVDF 203
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 29.5 bits (63), Expect = 0.40
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 239 SHELLAAATPGHTNGC--LTYICHEQSLAFTGDTLLIR 346
++E + A TP H L ++CH+QS +FT L I+
Sbjct: 534 AYERVLAETPNHAKVLQQLGWLCHQQSSSFTNQDLAIQ 571
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 30 NFSMASNGIDSDQLNCFFFNFSEHT 104
N+S+ SNG S+ NC+ N EHT
Sbjct: 14 NYSVYSNGTISNFTNCYLIN-DEHT 37
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 291 LTYVTNSHWRSLVTPS*SGVA-AAPTSRRVTLRPSTNRSTIEYSLCPTSTCCIPRTIT 461
LT VTN + SL S S APT +++ L P ++I S TST T T
Sbjct: 462 LTGVTNEYSESLAKRSLSEKPKTAPTGKQLALHPLRRETSILDSTNTTSTNATNTTTT 519
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.6 bits (56), Expect = 2.8
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +2
Query: 221 DLVRFGSHELLAAATPGHTNGCLTYICHEQSLAFTGDTLLIRGCG-RTDFQEGNSETLYK 397
+LVR G EL+ H + C + E S GD + G + G +ET+Y
Sbjct: 48 ELVRVGHEELVGEVIRIHQDKCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYD 107
Query: 398 SVHNRIFTLPDEYVLYPAHDYRGQTATSVAEEKKYNPRLTKSL 526
+ + + D+ + RG S+ E K++ K L
Sbjct: 108 GIQRPLKQIFDK--SQSIYIPRGINTESLNREHKWDFTPNKDL 148
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = -2
Query: 288 KHPLVWPG---VAAARSSWLPNRTRSPSSRWISAWAPESLP--MTLLVPGTSDFNFPSAG 124
K P + PG A+ SS ++ ++ S+ A + P T V G SD++ PSAG
Sbjct: 283 KRPGMGPGGKDATASSSSSFSSKREEAAAEPSSSTATDIPPPYSTPSVAGASDYSTPSAG 342
Query: 123 Y 121
Y
Sbjct: 343 Y 343
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +2
Query: 260 ATPGHTNGCLTYICHEQSLAFTGDTLLIRGCGRTDFQEGNSETLYKSVHNRIFTLPD 430
A P NG L Y E + G L + GR F + L+K V++ ++ +PD
Sbjct: 197 AAPEVINGKL-YAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPD 252
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 4.9
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = +2
Query: 272 HTNGCLTYICHEQSLAFT-GDTLLIRGCGRTDFQEGNSETLYK-SVHNRIFTLPDEYVLY 445
HT+G L + ++S A TL+ + C RTD+ + L+ H P+E +
Sbjct: 1022 HTSGVLDEL--DESFAMKEAKTLVKKTCARTDYMSSELQKLFGIHFHKLSHKNPNEIIRM 1079
Query: 446 PAH--DYRGQTATSVAEEKKYN-PRLTKSLAEF 535
H D + ++ +K N P+L L +
Sbjct: 1080 ILHCDDSMNECVEFLSSDKVLNQPKLKADLEPY 1112
>SPBC1105.18c ||SPBC887.21c|peptide release
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 107 MCVFTEIKKKTV*LIRVNAIGCHAEINRR 21
+C + KT +R+NA C AE+N R
Sbjct: 2 LCAARKCLNKTFISVRLNAFSCLAELNFR 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,634
Number of Sequences: 5004
Number of extensions: 52026
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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