Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30064
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.7  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   1.7  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.3  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 378 LPSWKSVRPQPRIKRVSPV 322
           LPSW    PQP I +  P+
Sbjct: 28  LPSWDGKMPQPCILKPKPL 46


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 6   SSDLSTSINFSMASNGIDSDQLNC 77
           S D++T  N   A NG D  QL C
Sbjct: 47  SEDIAT--NIQAAKNGADMSQLGC 68


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 6   SSDLSTSINFSMASNGIDSDQLNC 77
           S D++T  N   A NG D  QL C
Sbjct: 47  SEDIAT--NIQAAKNGADMSQLGC 68


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = -2

Query: 279 LVWPGVAAARSSWLPNRTRSPSSRWISAWAP 187
           LV P +      W P     P   WI  W P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHPWLP 548


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 374  GNSETLYKSVHNRIFTLPDEYVL 442
            GN+  LY + HN+I + P   VL
Sbjct: 1468 GNTYQLYLTSHNKIGSSPSSPVL 1490


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 374  GNSETLYKSVHNRIFTLPDEYVL 442
            GN+  LY + HN+I + P   VL
Sbjct: 1464 GNTYQLYLTSHNKIGSSPSSPVL 1486


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 404 GPICRGSQSYPPGSR 360
           G +CRG    PP  R
Sbjct: 645 GDVCRGKLKLPPDGR 659


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 189 PESLPMTLLVPGT 151
           P+ LP+TL+VP T
Sbjct: 25  PKYLPLTLIVPIT 37


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 99  HTHACRPYNRHWGS*SHS 152
           H+HA  P+++H    +HS
Sbjct: 434 HSHAATPHHQHSTPLAHS 451


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 252 RSSWLPNRTRSPSSRWISAW 193
           R + + N TR P + W+S +
Sbjct: 149 RDARIVNGTRQPPNNWLSVF 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,257
Number of Sequences: 438
Number of extensions: 3711
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)