Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30063
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 71 1e-13
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.3
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 27 2.3
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 27 3.0
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 27 3.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 5.3
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 26 5.3
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 25 7.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 7.0
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 7.0
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.2
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 25 9.2
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch... 25 9.2
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 70.9 bits (166), Expect = 1e-13
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Frame = +2
Query: 230 TAAVSVNANRLKSSPAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 406
T S+ NR ++ + FL G ++ YV+ MY+AW DPNSVHASW A+F+N G
Sbjct: 28 TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87
Query: 407 PGAAYTPPPNLAPYNKNXVPLTSLVXXXXXXXXXXXXXXXNEKIIDDHLAVXAIIXSYQA 586
P A+ PP L Y + L S + + ++ V ++ +YQ+
Sbjct: 88 PSKAFQAPP-LLDYADSYTALDSSLINGNNYADID---------VGIYMKVQLLVRAYQS 137
Query: 587 RGHPGGRCGP 616
RGH + P
Sbjct: 138 RGHHLAKLDP 147
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 27.1 bits (57), Expect = 2.3
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +2
Query: 203 ASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSSS---AYVETMYNAWLADPNSVHASWD 373
AS L ++P +++ S NA P A P +S TMY + P+S + +
Sbjct: 50 ASSLNSRPVSSSGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYAS--PPPSSNYNTAK 107
Query: 374 AFFRNATNGAQPGAAYTPPPNLAP 445
++ + A+P ++Y PPP+ P
Sbjct: 108 PPYQTSQFYARPQSSYAPPPSGRP 131
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 193 TLARFRDVKHYPCSMHDCYLL*PPGVSDL*HCSNKTKV 80
TL R D + S C + PGVSD +CS T++
Sbjct: 41 TLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRM 78
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 26.6 bits (56), Expect = 3.0
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = +2
Query: 221 KPQTAAVSVNANRLKSSPAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATN 397
KP + + N N + + NG++S+ V Y ++ S F T
Sbjct: 360 KPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQ 417
Query: 398 GAQPGAAYTPPPNLAPYNK 454
GA P Y PPP + P K
Sbjct: 418 GAPPSHTYGPPPPVQPKPK 436
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/71 (28%), Positives = 28/71 (39%)
Frame = +2
Query: 155 ARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSSSAYVETMYNA 334
A + N+ S E+ S Q VN N S AEP NGS++A N
Sbjct: 183 ADTMLNLESSENREQPTSLKEENTQEDDEKVNGNLANISKRAEPQNNGSTNASSLQSSNY 242
Query: 335 WLADPNSVHAS 367
+P H++
Sbjct: 243 LPTNPTLTHSN 253
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 191 SERFASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSSS 307
S +S ++N P AVS + L SP++ P + S+S
Sbjct: 136 SSSTSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSAS 174
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 224 PQTAAVSVNANRLKSSPAAEPFLNGSSSAYVETM--YNAWLADPNSVHAS 367
P+TA + + R++SSP P + S + + ++WL PNS+ A+
Sbjct: 477 PRTAKLKNDLRRIQSSPIVAPTPDTSFREPLSEIGSNDSWLVLPNSLSAN 526
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 284 PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTP 427
P N + SA + + ++D PN H DAF ++ + QP +A P
Sbjct: 9 PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSAVEP 57
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 71 GLLDLRFVR--TVSKV*HTRGSQQITIMHRARIVFNISKSGQSERFASWLLNKPQTAAVS 244
GL ++ F T S V G + I + V +KSG+S++ SWL +
Sbjct: 172 GLREVTFALFITFSIVPIITGILTVYIYKKKYCVIKFNKSGRSKKKDSWLKRSKDELLRT 231
Query: 245 VNANRLKSSPAAEPFL 292
+AN L + EP +
Sbjct: 232 DSANLLTLNDNDEPVM 247
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 267 APPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTR 365
+P + P+++APV+ TS T + TP R
Sbjct: 77 SPKKATPAAVAPVEATSAVDTSEAVASMTPNKR 109
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +2
Query: 173 ISKSGQSERFASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSSSAYVETMYNAWLADPN 352
+S S Q +S L +A ++ +++ +S ++ L+ SSS+ V + ++ ++ +
Sbjct: 84 VSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASSSSSGMSSSS 143
Query: 353 SVHAS 367
H+S
Sbjct: 144 LSHSS 148
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 299 SSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 433
SS +VET Y A+PNS+ +D ++NG AY P
Sbjct: 118 SSPFFVETQYAYQKANPNSIAFLYD--LSQSSNGTLYMRAYQLTP 160
>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 631 VVIPSGSTSAARVTASLVTXDDSXHGEVIVDYLLVYRGTC 512
+V+ GST +A+ S V H ++ YLLV +G C
Sbjct: 288 IVLKDGSTLSAKKIVSSVDEGKLPHQQIQQRYLLV-KGDC 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,377
Number of Sequences: 5004
Number of extensions: 48382
Number of successful extensions: 156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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