Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30063
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 56 7e-09
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 52 5e-07
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 29 2.4
06_03_0219 - 18227559-18227858,18227864-18228340 29 3.1
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 29 3.1
12_02_1046 + 25662715-25662884,25663163-25663757 28 5.4
09_02_0591 - 10997771-10998054,10998671-10999017,10999088-109992... 28 5.4
10_08_0974 + 21969713-21971914 28 7.2
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 7.2
01_04_0051 + 15430980-15431591 28 7.2
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 56.0 bits (129), Expect(2) = 7e-09
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +2
Query: 269 SPAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 418
S + FL+G+SS Y+E + AW ADP+SV SWD FFRN A P +A
Sbjct: 46 SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95
Score = 21.4 bits (43), Expect(2) = 7e-09
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +2
Query: 539 IDDHLAVXAIIXSYQARGHPGGRCGPAR 622
I + + + ++ +YQ GH + P R
Sbjct: 102 IQESMQLLLLVRAYQVNGHMKAKLDPLR 129
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 269 SPAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 388
S + FL+G+SS Y+E + AW ADP SV SWD FFRN
Sbjct: 54 SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 267 LFSLLAFTETAAVCGLFRSHDANLSLWPDLEMLNTILARCM 145
L L A + CGLF HD +W L +L++IL CM
Sbjct: 3232 LADLEALDHMLSACGLFPYHDHCFFVW-KLSLLDSILDLCM 3271
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 270 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 428
PPRR PS + +SR + +P+ LG+ ++ +S+ H RR
Sbjct: 118 PPRRRPSRFSAPAASSRLSRLARAPSGRAVFSLGLAATSSPSPSVSRGKHRRR 170
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 270 PPRRNPSSMAPVQLTSRPCTMHGSPTQTP 356
PP P S AP+Q +RP + G PT P
Sbjct: 273 PPPPPPPSPAPIQHFARPLHVWGHPTMDP 301
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 416 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 330
RRLAEL LS C P+ R+R++ R A+H
Sbjct: 56 RRLAELSLSSC---CPRLRLRAVRRLALH 81
>09_02_0591 -
10997771-10998054,10998671-10999017,10999088-10999247,
10999333-10999401,11000256-11000382,11000759-11001021,
11001122-11001279,11001390-11001464,11002876-11002947,
11003039-11003177,11003275-11003744,11003907-11003935
Length = 730
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 200 FASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSS 304
FA + NK + VS++ N + SSP + P+LNG S
Sbjct: 84 FADFQNNKSREFTVSID-NGVHSSPYSTPYLNGLS 117
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 DPNSVHAS-WDAFFRNATNGAQPGAAYTPPPNLAPY 448
DP ++ AS W + FR QP AA PPP+L+P+
Sbjct: 67 DPVAITASLWVSSFR-----PQPTAAAPPPPSLSPF 97
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 284 VPPRGSSSAYWHLLKPR 234
+PPR + WHL+KPR
Sbjct: 814 LPPRDKNEENWHLIKPR 830
>01_04_0051 + 15430980-15431591
Length = 203
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 259 AEELPRGGTLPQWLQFSLRRDHVQCMARRPKLRTRV 366
A +L G P W+Q + R H + + RRP L R+
Sbjct: 86 AGDLVDNGGAPAWVQDARRDAHRRALRRRPALLRRI 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,114
Number of Sequences: 37544
Number of extensions: 368955
Number of successful extensions: 1177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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