Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30063
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                 99   3e-21
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             33   0.26 
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   7.4  
SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)               27   9.7  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 54/119 (45%), Positives = 64/119 (53%)
 Frame = +2

Query: 275 AAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNK 454
           A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G  PG AY PPP L     
Sbjct: 17  AKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYYPPPVLGKPVA 76

Query: 455 NXVPLTSLVXXXXXXXXXXXXXXXNEKIIDDHLAVXAIIXSYQARGHPGGRCGPARDYD 631
               + S V                  I++DHLAV ++I SYQ RGH      P  + D
Sbjct: 77  VATAMPSAVDQSNI-----------TAIVEDHLAVYSMIRSYQIRGHRKAMLDPLGEQD 124


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 249 MPIG*RAPPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRR 428
           +P G ++PP  +P   +P+    R     GSP+  P  R   + S  R +  SQ+P    
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315

Query: 429 RP 434
           +P
Sbjct: 316 QP 317


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 478 ERCERDXILVVWREIGRRRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 314
           E C +   ++  R+ GR  VCG +  SVC+  E   P  +  V VG   +  G D
Sbjct: 355 ETCGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 553 EVIVDYLLVYRGTC*NRRHSAARWHERCERDXILVVWREIGRRRVCGAWLSSVCRI 386
           +V V+Y   YRG    +    +R H R E   +  + R   +R   G W  S+ R+
Sbjct: 140 KVCVEYHSFYRGKTEYQAIEESRTHARPEPKIVRTLSRRYSKRSDSGTWSRSLRRL 195


>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
          Length = 815

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 218 NKPQTAAVSVNANRLKSSPAAEP 286
           N PQT AV+V  N  KSSP   P
Sbjct: 616 NGPQTNAVAVKKNDPKSSPPTSP 638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,812,273
Number of Sequences: 59808
Number of extensions: 399668
Number of successful extensions: 1157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)