Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30063
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89803-1|AAD03794.1|  250|Anopheles gambiae Tc1-like transposase...    25   2.7  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.7  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   6.2  
AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    23   8.2  

>U89803-1|AAD03794.1|  250|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +2

Query: 263 KSSPAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDA 376
           K+ P +  F+  + S +       WLAD N     W A
Sbjct: 143 KNLPRSWMFMQDNDSKHTSGTVQTWLADNNVKTMKWPA 180


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 206 SWLLNKPQTAAVSVNANRL 262
           +W+ ++ +T A+ VN NRL
Sbjct: 45  NWVTDESKTVAIVVNGNRL 63


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 350 NSVHASWDAFFRNATNGAQPGAAYTPPPNLAP 445
           N     + A F N  N AQP  A  PPP + P
Sbjct: 563 NPAQLRFPAGFPNLPN-AQPPPAPPPPPPMGP 593


>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 216 RSHDANLSLWPDL 178
           RSHD  +  WPDL
Sbjct: 228 RSHDHPVMFWPDL 240


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,253
Number of Sequences: 2352
Number of extensions: 13839
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)