Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30063
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ...   105   2e-23
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical ...    28   6.5  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   6.5  

>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
           protein T22B11.5 protein.
          Length = 1029

 Score =  105 bits (253), Expect = 2e-23
 Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
 Frame = +2

Query: 146 MHRARIVFNISKSGQSERFASWLLNKPQTAAVSVNANRLKSSPAA---EPFLNGSSSAYV 316
           MHRA ++  ++   +     +    K   +A ++  +R +S  AA   EPFLNGSSS Y+
Sbjct: 1   MHRASLICRLASPSRINAIRNASSGKSHISASTLVQHRNQSVAAAVKHEPFLNGSSSIYI 60

Query: 317 ETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNXVPLTSLVXXXXX 496
           E MY AWL DP+SVH SWDA+FRN   GA PG A+  PP  A      V   +       
Sbjct: 61  EQMYEAWLQDPSSVHTSWDAYFRNVEAGAGPGQAFQAPPATAYAGALGVSPAAAQVTTSS 120

Query: 497 XXXXXXXXXXNEKIIDDHLAVXAIIXSYQARGH 595
                     + + I DHL +  +I SYQ RGH
Sbjct: 121 APATRLDTNASVQSISDHLKIQLLIRSYQTRGH 153


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +2

Query: 311 YVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 433
           Y+ +  + +  DP+S+ A W A F N  +    G  ++  P
Sbjct: 292 YITSQNHGYAVDPDSLPADWKALFTNENDKTNEGIVHSSKP 332


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 299 SSSAYVETMYNAWLAD-PNS-VHASWDAFFRNATNGAQPGAAYTPPPN 436
           S++  ++ ++   +A+ PN  V+  W+A F+ +T+  QP    TP PN
Sbjct: 383 STTNTMKVVFRPCIANCPNDGVNYRWEADFKPSTDVTQPPVTVTPNPN 430


>AF106583-1|AAM15569.1|  183|Caenorhabditis elegans Hypothetical
           protein F23C8.13 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 437 DWAAACMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSR 315
           D  +  MRR  + RLS C +   +TR    GR  +  T SR
Sbjct: 73  DGESVMMRRRRQARLSMCNEQREQTRHVVSGRATLRMTSSR 113


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 305 SAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGA 415
           ++Y   + N+     PNS H+ +  F R+A+ GAQP A
Sbjct: 635 TSYAANLQNSMQQSAPNSGHSGYATFDRSASLGAQPQA 672


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,276,114
Number of Sequences: 27780
Number of extensions: 287396
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)