Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30063
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    56   2e-08
At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 compone...    54   6e-08
At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containi...    36   0.030
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ...    29   2.0  
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ...    29   2.6  
At5g20230.1 68418.m02408 plastocyanin-like domain-containing pro...    29   3.4  
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    28   4.5  
At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein si...    28   4.5  
At1g65260.1 68414.m07398 PspA/IM30 family protein contains Pfam ...    28   6.0  
At5g41680.2 68418.m05065 protein kinase family protein contains ...    27   7.9  
At5g41680.1 68418.m05064 protein kinase family protein contains ...    27   7.9  
At4g22753.1 68417.m03284 sterol desaturase family protein simila...    27   7.9  
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ...    27   7.9  

>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/67 (43%), Positives = 38/67 (56%)
 Frame = +2

Query: 188 QSERFASWLLNKPQTAAVSVNANRLKSSPAAEPFLNGSSSAYVETMYNAWLADPNSVHAS 367
           Q+  F S +L     +A  V    +  S   + FL+G+SS Y+E +  AW ADPNSV  S
Sbjct: 37  QTRCFHSTILKSKAESAAPV-PRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDES 95

Query: 368 WDAFFRN 388
           WD FFRN
Sbjct: 96  WDNFFRN 102


>At3g55410.1 68416.m06154 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1017

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 23/40 (57%), Positives = 28/40 (70%)
 Frame = +2

Query: 269 SPAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 388
           S   + FL+G+SS Y+E +  AW ADPNSV  SWD FFRN
Sbjct: 60  SKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRN 99


>At2g31400.1 68415.m03837 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 918

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 25/70 (35%), Positives = 33/70 (47%)
 Frame = +3

Query: 222 NHRLPRFQ*MPIG*RAPPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTE 401
           NHR       P G  APP  + +++AP QL+  P   + SP QTP + L   FS  R T 
Sbjct: 88  NHRPYGASSSPRG-SAPPPSSVATVAPAQLSQPP---NFSPLQTPKSDLSSDFSGRRSTR 143

Query: 402 LSQAPHTRRR 431
                H  R+
Sbjct: 144 FVSKMHFGRQ 153


>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 1056

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 317 ETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNXVPLTS 475
           E    AW   P +VH + +  F+   N   P     PPP+  P   N    TS
Sbjct: 841 EAPSQAWKRGPQTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASNNPNYTS 893


>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
           contains Pfam profile: PF01363 FYVE zinc finger
          Length = 601

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
 Frame = +2

Query: 224 PQTAAVSVNANRLKS--SPAAEPFLNGSS-SAYVETMYNAWLADPNSVHASWDAFFRNAT 394
           P   A S+N N   +   P   P ++    S+Y      A    P S H  +  + ++ T
Sbjct: 96  PSPPATSLNPNSYSTFNQPPPPPTIHPQPLSSYGSFDSTAPYQQPTSQHMYYSPYDQHQT 155

Query: 395 NGAQ----PGAAYTPPPNLAPYNKN 457
           +G      P +A  P PN APY+ +
Sbjct: 156 SGYSSAPPPSSAPAPNPNPAPYSSS 180


>At5g20230.1 68418.m02408 plastocyanin-like domain-containing
           protein
          Length = 196

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 389 ATNGAQPGAAYTPPPNLAPYNKNXVPLTS 475
           AT GA PGA  TP P   P      P T+
Sbjct: 128 ATGGATPGAGATPAPGSTPSTGGTTPPTA 156


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 190 LARFRDVKHYPCSMHDCYLL*P 125
           L  FRD+K  PCS+ DC +  P
Sbjct: 353 LVMFRDLKILPCSVRDCVMQYP 374


>At1g11820.1 68414.m01358 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 511

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 299 SSSAYVETMYNAWLADPNSVHASWDAFFRNAT 394
           +SS Y+  ++N  L  P    ASW  F+ N+T
Sbjct: 327 TSSVYIYELFNEDLRAPPVSEASWGLFYGNST 358


>At1g65260.1 68414.m07398 PspA/IM30 family protein contains Pfam
           PF04012: PspA/IM30 family profile; similar to
           Membrane-associated 30 kDa protein, chloroplast
           precursor (M30) (Swiss-Prot:Q03943) [Pisum sativum];
           similar to phage shock protein A (GI:28806161) [Vibrio
           parahaemolyticus]; similar to Phage shock protein A.
           (Swiss-Prot:P23853) [Shigella flexneri]
          Length = 330

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 270 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRRR 431
           PP R  +S +P   ++RPC++   P +T +   G    A+R   L  A   R R
Sbjct: 13  PPLRPTASSSPSTSSNRPCSLRILPLRTSF--FGNSSGALRVNVLRLACDNRLR 64


>At5g41680.2 68418.m05065 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 333

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 422 CMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKLNWS 297
           C   + +L L+H  K  P+T +RS G  A   T +R+   +S
Sbjct: 194 CYGCICDLGLTHITKSLPQTTLRSSGYHAPEITDTRKSTQFS 235


>At5g41680.1 68418.m05064 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like protein kinase (GI:4008006) [Arabidopsis
           thaliana]; similar to receptor-like kinase RHG1
           (GI:21239380) (GI:21239382) [Glycine max]
          Length = 359

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 422 CMRRLAELRLSHCGKMHPKTRVRSLGRRAMHCTWSRRKLNWS 297
           C   + +L L+H  K  P+T +RS G  A   T +R+   +S
Sbjct: 220 CYGCICDLGLTHITKSLPQTTLRSSGYHAPEITDTRKSTQFS 261


>At4g22753.1 68417.m03284 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 291

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 341 RAMHCTWSRRKLNWSH*GRVPPRGSSSAYWH 249
           R MHC W   K++  H     P G +S Y H
Sbjct: 144 RWMHCKWGYEKIHRIHHEYTSPIGYASPYAH 174


>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
           glycogen synthase Q43847 from [Solanum tuberosum]
          Length = 792

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 270 PPRRNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHT 422
           PP +  S M   + TS P T  G P++   +R G  +S    + L++AP T
Sbjct: 215 PPYKPSSVMTSPEKTSDPVTSPGKPSK---SRAGAFWSDPLPSYLTKAPQT 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,591,997
Number of Sequences: 28952
Number of extensions: 273301
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)