Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30062
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 40 1e-04
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 27 0.83
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 0.83
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 1.1
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 1.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 3.4
SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me... 24 5.9
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 24 5.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 24 7.8
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 24 7.8
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 24 7.8
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 39.5 bits (88), Expect = 1e-04
Identities = 24/59 (40%), Positives = 32/59 (54%)
Frame = +3
Query: 168 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGLPTGMK 344
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG G PTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEK 91
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 0.83
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 104 RYIVDINCQRPNNAQMWFCALN 39
R +VD++C+R +N WF A+N
Sbjct: 133 RLVVDVSCRRKDN--RWFAAIN 152
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 0.83
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 325 PAPPLPRRPDVFISLTIQSVP 263
PAP P +P++FIS +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 239 IPVPSGESTLQPPFMSTIQ 183
+P P+ TL PP +ST+Q
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQ 1199
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +2
Query: 68 YWAFGN*CQQCTGALPADPGAFKRQVWT 151
YW+ G C +C P G+ ++ WT
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWT 407
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 1.5
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 80 QRPNNAQMWFCALNHSCQCTSHIS 9
+ PNNA++W A +H +++S
Sbjct: 136 KHPNNAELWVVACDHEFSINANVS 159
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 3.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 322 APPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRP 188
A P+PRRP +F + S S++ SP A+ +H P
Sbjct: 96 AQPVPRRPSLFDRPNLVSRSSSRLGDSPSLSPVAQVANPIHHTAP 140
>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
RNA-mediated gene silencing |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 24.2 bits (50), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 251 LLRQIPVPSGESTLQPPFMSTIQVCENPIAIG 156
L+ Q+P + L P F S QVC+N IG
Sbjct: 169 LVIQLPNATDVLNLVPKFQSLSQVCKNNDWIG 200
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 27 LTRVIQGTKPHLGIIGPLAINVNN 98
L R Q HL + PL INVN+
Sbjct: 131 LVRAYQSRGHHLAKLDPLGINVNH 154
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 23.8 bits (49), Expect = 7.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -2
Query: 343 FIPVGKPAPPLPRRPDVFISLTIQSVPFSKISFVK 239
F PV P L P+VF ++P + +F K
Sbjct: 2413 FAPVPMTKPILSSLPEVFSKHNGSAIPLGRFTFFK 2447
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 23.8 bits (49), Expect = 7.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 153 LADSDRVFTNLYGRHEWRLKGALARGDWYLTK 248
L + D FTN+ G +WR K RG + T+
Sbjct: 419 LNEYDPKFTNVTGSVDWRSKLESQRGAVFATE 450
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 23.8 bits (49), Expect = 7.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 337 PVGKPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAP 212
PV AP +P+RP V + SVP ++ V + P P
Sbjct: 551 PVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQP 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,943
Number of Sequences: 5004
Number of extensions: 34982
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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