Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30062
(347 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 119 7e-28
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 33 0.047
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 31 0.33
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 28 1.8
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 28 2.3
07_03_0754 - 21256860-21257702 28 2.3
04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411 28 2.3
08_01_0869 + 8487518-8487697,8487792-8488127,8488211-8488410,848... 27 3.1
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 27 4.0
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 27 4.0
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846 27 4.0
11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582 27 5.3
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 27 5.3
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 5.3
12_01_0828 + 7663958-7664114,7664345-7664479,7664588-7664680,766... 26 7.1
10_08_1031 - 22427691-22428086 26 7.1
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 26 7.1
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 26 7.1
06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695 26 7.1
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 26 7.1
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533... 26 7.1
02_02_0586 - 11861509-11861637,11863651-11863815,11864738-118648... 26 7.1
01_07_0104 + 41101909-41102017,41103490-41103568,41103663-411037... 26 7.1
08_01_1000 + 10154024-10154147,10155500-10155761,10155839-101558... 26 9.3
04_04_1262 + 32200823-32201190,32201311-32201818,32201927-322020... 26 9.3
04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960 26 9.3
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 26 9.3
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 119 bits (286), Expect = 7e-28
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = +3
Query: 129 PSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLR 308
P K +G L D DR+FTNLYG+H+ LKGA+ RGDW+ TK+++LKG DWIVNEMK SGLR
Sbjct: 78 PEKTHFGDLKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLR 137
Query: 309 GRGGAGLPTGMKW 347
GRGGAG P+G+KW
Sbjct: 138 GRGGAGFPSGLKW 150
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 33.5 bits (73), Expect = 0.047
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 VNNVPVR-FQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
V+ P+R ++ T+A + + P A + RV+ +L+ EW +G R DW
Sbjct: 164 VDGTPIREYRNTEATTGVAF-PRAQAMRVYASLWDAEEWATQGGRVRTDW 212
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 30.7 bits (66), Expect = 0.33
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +3
Query: 90 VNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
V+ VP+R + + + + P+ VF++++ +W +G L + DW
Sbjct: 175 VDKVPIR-EYRNSDKPNTFFPIMKPMYVFSSIWNADDWATRGGLEKTDW 222
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 319 PPLPRRPDVFISLTIQSVPFSKI 251
PP P+ P VF +TI S+P +I
Sbjct: 31 PPNPKNPVVFFDVTIGSIPAGRI 53
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Frame = -3
Query: 246 SSNTSPLGREHPSTSIHVDHTSL*KPDRY----RPAVHTCLLK 130
SSN L REHP + + +TS+ PD + PA+ T L +
Sbjct: 520 SSNLKNLMREHPLYHVLIPYTSIALPDDFMGNEAPALRTLLFR 562
>07_03_0754 - 21256860-21257702
Length = 280
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 261 SVKSPSSNTSPLGREHPSTS 202
S+ PSS + PLGR HPS S
Sbjct: 77 SLSRPSSLSDPLGRFHPSAS 96
>04_04_1064 - 30516378-30516735,30516852-30517051,30517148-30517411
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 78 LAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
+ + V+ P+R + A Y P + R++ +L+ +W +G + DW
Sbjct: 154 ILVLVDGTPIREMKNHADKGIAY-PSSQRMRLYGSLWNADDWATQGGRVKTDW 205
>08_01_0869 +
8487518-8487697,8487792-8488127,8488211-8488410,
8488586-8488973
Length = 367
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +3
Query: 78 LAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
+ I V+ P+R + Q + + PL R++ +++ +W +G + DW
Sbjct: 238 ILILVDGTPIRQMKNQLRNDIPF-PLYQPMRLYASIWDADDWATQGGRIKTDW 289
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 346 HFIPVGKPAPPLPRRPDVFISLTIQSVPFSK 254
++ P G PA PLPR P I+ ++ + S+
Sbjct: 288 YYPPSGGPAVPLPREPKEVITKLLEELEMSE 318
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 346 HFIPVGKPAPPLPRRPDVFISLTIQSVPFSK 254
++ P G PA PLPR P I+ ++ + S+
Sbjct: 289 YYPPSGGPAVPLPREPKEVITKLLEELEMSE 319
>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
Length = 293
Score = 27.1 bits (57), Expect = 4.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 78 LAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
+ I V+N+P+R + S + P+ R+F L+ +W +G + DW
Sbjct: 162 ILILVDNMPIRQFKNHLDSGVPF-PIYQPMRLFGCLWDADDWATEGGRIKTDW 213
>11_05_0095 + 19009866-19010159,19010255-19010448,19012183-19012582
Length = 295
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +3
Query: 78 LAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
+A V++ P+R + +Y P +++++L+ +W +G + DW
Sbjct: 162 IAFFVDDTPIRVFKNSKDLGVRY-PFNQPMKLYSSLWNADDWATRGGREKTDW 213
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 346 HFIPVGKPAPPLPRRPDVFISLTIQSVPFSK 254
++ P G PA PLPR P I+ ++ + S+
Sbjct: 291 YYPPSGGPAVPLPREPKGVITKLLEELEMSE 321
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 201 WRLKGALARGDWYLTKEILLKGTDW 275
W+ G AR L KE+LL G DW
Sbjct: 44 WKPLGLSARKRARLRKEVLLAGEDW 68
>12_01_0828 +
7663958-7664114,7664345-7664479,7664588-7664680,
7667122-7668368
Length = 543
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 242 QIPVPSGESTLQPPFMSTIQVCENPIAIGQRSILVF*RRLGLLEAHRYIVDINCQRP 72
Q V +GESTL+ + ++ NP A+ ++ R L IVDI+ +P
Sbjct: 478 QYEVAAGESTLKDKYPRDHEIFTNPTALHKKGFTFM--RHTFLNGQDIIVDIDRFKP 532
>10_08_1031 - 22427691-22428086
Length = 131
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 340 IPVGKPAPPLPRRPDVFIS 284
+ VG P PPLP +P V +S
Sbjct: 4 LAVGSPPPPLPLQPRVVLS 22
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 325 PAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAP 212
PAPP+P P + S+PF + P A AP
Sbjct: 524 PAPPIPMPPAPAPPIPTPSMPFPTVPAPPVTVPPATAP 561
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 250 SFVKYQSPRARAPFNLHSCRP 188
+F++++SPRAR F LHS P
Sbjct: 183 TFLRHKSPRARIGFFLHSPFP 203
>06_03_1251 + 28749558-28749818,28749953-28750146,28750269-28750695
Length = 293
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 VNNVPVR-FQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
V+ P+R F+ +A + P + RV+ +L+ +W +G + DW
Sbjct: 155 VDGTPIRDFKNHEA--RGVAFPKSQPMRVYASLWNADDWATQGGRVKADW 202
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 337 PVGKPAPPLPRRPDVFISLTIQSVPFS 257
P + APPL RP V +++T S+P S
Sbjct: 884 PKLQEAPPLNARPKVEVAITSDSLPSS 910
>03_06_0531 +
34552206-34552598,34552665-34552735,34553363-34553369,
34553603-34553736,34553834-34554245,34554655-34554753,
34555059-34555283,34555652-34556029,34556412-34556555,
34556832-34556927,34557228-34557547,34557965-34558040
Length = 784
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 117 QTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 236
Q P+ D YG ++SDR F N R G RG W
Sbjct: 658 QDDGPATDSYGRFSNSDRGFRNRRSRGGGSRGG---RGGW 694
>02_02_0586 -
11861509-11861637,11863651-11863815,11864738-11864846,
11864971-11865065,11865169-11865702,11866299-11866499,
11867826-11868090,11868111-11868736
Length = 707
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 138 DKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW 275
D++G L D N YGR + WY E+LL TD+
Sbjct: 397 DRHGVLKIGDFGLANYYGRRRPLTSRVVTL--WYRAPELLLGATDY 440
>01_07_0104 +
41101909-41102017,41103490-41103568,41103663-41103753,
41103936-41103962
Length = 101
Score = 26.2 bits (55), Expect = 7.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 17 GWCTDKSDSGHKTTFGHYW 73
GW +DKS++ +T GH++
Sbjct: 37 GWISDKSNNQFRTNHGHHY 55
>08_01_1000 +
10154024-10154147,10155500-10155761,10155839-10155885,
10155967-10155998,10156079-10156146,10156214-10156605,
10156811-10157009,10157494-10157636,10157722-10158366,
10158493-10158551,10158725-10158823
Length = 689
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 75 PLAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHE 200
P+ +N PV+ + P++DK D++ VF+N Y + +
Sbjct: 339 PVQDEMNAQPVQDEMNAHPAQDKRRIRYDNEIVFSNAYMKRQ 380
>04_04_1262 +
32200823-32201190,32201311-32201818,32201927-32202031,
32202222-32202287,32202471-32202536,32202698-32202751,
32202895-32203041
Length = 437
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 275 PVGSFQ*NLLRQIPVPSGESTLQPPFMSTIQ 183
P G FQ +LLR + P+ + Q P ++ +Q
Sbjct: 179 PYGGFQSSLLRSLMEPTAKQQQQQPALAGLQ 209
>04_03_0261 + 13586474-13587833,13591621-13591707,13591932-13591960
Length = 491
Score = 25.8 bits (54), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 124 WVCWKRTGTLLTLIAKGPIMP 62
W+C+KR +L ++ +GP P
Sbjct: 367 WLCFKRKYIMLAMLIQGPRQP 387
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 210 KGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRG 317
KG A D + KE+ L+G D + + S L GRG
Sbjct: 220 KGMGAHVDLFYRKELPLRGFDDEMRTVVASNLEGRG 255
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,673,371
Number of Sequences: 37544
Number of extensions: 266076
Number of successful extensions: 769
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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