Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30062
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)                79   1e-15
SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              30   0.59 
SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)              30   0.59 
SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)                     27   3.2  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)                   27   4.2  
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)                 27   5.5  
SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)                 26   7.3  
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)              26   9.7  
SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_58999| Best HMM Match : Exo_endo_phos (HMM E-Value=2.6)             26   9.7  
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               26   9.7  
SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.7  

>SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)
          Length = 369

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 32/40 (80%), Positives = 35/40 (87%)
 Frame = +3

Query: 228 GDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGLPTGMKW 347
           GDWY TKEI+LKG DWI+ E+ TSGLRGRGGAG PTGMKW
Sbjct: 1   GDWYKTKEIILKGPDWILKEITTSGLRGRGGAGFPTGMKW 40


>SB_44387| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 160

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   RNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVR 110
           R MA ++  +++  + H G+IG + +N    P+R
Sbjct: 62  RPMASSVENILKRIQSHKGVIGSIVVNSEGTPIR 95


>SB_48945| Best HMM Match : Robl_LC7 (HMM E-Value=5.4e-23)
          Length = 101

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 9   RNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVR 110
           R MA ++  +++  + H G+IG + +N    P+R
Sbjct: 3   RPMASSVENILKRIQSHKGVIGSIVVNSEGTPIR 36


>SB_8909| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 568

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 60  LGIIGPLAINVNNVPVRFQQTQAPSKDKYGPL 155
           L ++G   +N+NN+ +++  T     DK+ PL
Sbjct: 162 LSMMGMSYVNINNLVIKYDNTLKALLDKHAPL 193


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 331 GKPAPPLPRRPDVFISLTI-----QSVPFSKISFVKYQSPRARAP 212
           G  + PLPRRP V +S  +     +SVP S  S     SP    P
Sbjct: 32  GSSSEPLPRRPPVPVSYELPASYQRSVPVSTSSSTPVSSPSNSTP 76


>SB_27367| Best HMM Match : rve (HMM E-Value=9.5e-17)
          Length = 1590

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 328 KPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNL-HSCRPYKFVKTRS 164
           KPAP  PR+P + ++ + + VP   ++   ++      P  L   C P    K ++
Sbjct: 519 KPAPTTPRQPPMPLASSTKDVPNLPLNMTSHRETTPPRPSELPFPCTPANNTKMKA 574


>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
          Length = 260

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 72  GPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRVFTNLYGRHEWR 206
           GP  ++V N+P RF+          +G +AD + ++     +H  R
Sbjct: 66  GPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVR 111


>SB_56569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 23  CTDKSDSGHKTTFGHYWAFGN 85
           CTD   SGH TT G+Y    N
Sbjct: 50  CTDHMVSGHSTTNGYYQLVDN 70


>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
          Length = 587

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 217 APFNLHSCRPYKFVKTRSLSASGPYLSFEGAWVCWKRTGTLLTLIAKG 74
           A +  H C   K V  R ++ +G  +  EGAW  W +    L L   G
Sbjct: 80  AAYPYHCCGFRKKVNNRKITGNGEAVVSEGAWY-WTKEHEYLRLDRPG 126


>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
          Length = 1596

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 325 PAPPLPRRPDVFISLTIQS 269
           P PPLP RP + +S T +S
Sbjct: 649 PVPPLPVRPSIVLSGTARS 667


>SB_20103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 67  LLGLWQLMSTMYRCASSRPRR---LQKTSMDRWPIAI-GFSQTCMVD 195
           LLG W + + M R   +RP+R   L    + R+ I I   S+TC+ D
Sbjct: 216 LLGAWIVRTLMDRGIITRPQRRTALVAKELARYNIDIAALSETCLTD 262


>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 237 YLTKEILLKGTDWIVNEMKTSGLRGRGGAG 326
           YL + I +KG D  + +    G  GRGG G
Sbjct: 164 YLVRHIQVKGKDVEMKKAADLGAGGRGGRG 193


>SB_58999| Best HMM Match : Exo_endo_phos (HMM E-Value=2.6)
          Length = 509

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -1

Query: 329 QTCSSPASKARCFHFINDPVGSFQ*NLLRQIPVPSGESTLQ 207
           Q C+S +SKA   H  ND V  F    L  IPV  G+S  Q
Sbjct: 305 QICASDSSKAEALHVQNDSV--FTKEDLTNIPV-LGDSPYQ 342


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -1

Query: 296 CFHFINDPVGSFQ*NLLRQIPVPSGESTLQPPFMS 192
           CFH++  P+ + + + +R   +P+   T+  P +S
Sbjct: 243 CFHWVTSPMEAKKLDSIRDRIIPASSETVDTPSIS 277


>SB_5008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 320 SSPASKARCFHFINDPVGSFQ*NLLRQIPVPS 225
           SS  S+  CF   N P GS   NLL Q+ + S
Sbjct: 117 SSTESEFGCFTQFNGPSGSTATNLLAQLDIGS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,567
Number of Sequences: 59808
Number of extensions: 288123
Number of successful extensions: 960
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)