Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30062
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-8|CAA90435.1|  479|Caenorhabditis elegans Hypothetical pr...   128   8e-31
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    31   0.23 
U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene...    28   2.1  
U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprote...    28   2.1  
U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical pr...    27   4.9  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    27   4.9  
AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    27   4.9  
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical ...    26   8.5  

>Z50109-8|CAA90435.1|  479|Caenorhabditis elegans Hypothetical
           protein C09H10.3 protein.
          Length = 479

 Score =  128 bits (310), Expect = 8e-31
 Identities = 53/71 (74%), Positives = 64/71 (90%)
 Frame = +3

Query: 135 KDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGR 314
           K  +G L DSDR+FTNLYGRH++RLKGA+ARGDW+ TKEI+LKG+DWI+ E+KTSGLRGR
Sbjct: 40  KTSFGNLKDSDRIFTNLYGRHDYRLKGAMARGDWHKTKEIILKGSDWILGELKTSGLRGR 99

Query: 315 GGAGLPTGMKW 347
           GGAG P+GMKW
Sbjct: 100 GGAGFPSGMKW 110


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 340 IPVGKPAPPLPRRPDVFISLTIQSVPFSKIS 248
           IP+  P PPLPR P     L   S+P+++I+
Sbjct: 492 IPMSSPPPPLPRTPQPNNGLPNASLPYNQIN 522


>U41531-7|AAA83161.2|  415|Caenorhabditis elegans Feminizing gene on
           x protein 1 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  GPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRVF 176
           GP  ++V+N+P RF+     +  +K+G ++D + +F
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIF 186


>U14946-1|AAA67723.1|  415|Caenorhabditis elegans ribonucleoprotein
           protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 72  GPLAINVNNVPVRFQQTQAPSK-DKYGPLADSDRVF 176
           GP  ++V+N+P RF+     +  +K+G ++D + +F
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIF 186


>U97017-2|AAB52359.1|  281|Caenorhabditis elegans Hypothetical
           protein F47B3.4 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 55  HIWALLGLWQLMSTMYRCASSRPRR 129
           H+W L GL  +  TM+ C  S+  +
Sbjct: 17  HLWTLFGLVSIAMTMFVCGKSKKNK 41


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 131 RRLGLLEAHRYIVDINCQRPNNAQMWFCALNHS 33
           R+L L E + +I+D+     NN Q W  ++ HS
Sbjct: 160 RQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHS 192


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 131 RRLGLLEAHRYIVDINCQRPNNAQMWFCALNHS 33
           R+L L E + +I+D+     NN Q W  ++ HS
Sbjct: 191 RQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHS 223


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 131 RRLGLLEAHRYIVDINCQRPNNAQMWFCALNHS 33
           R+L L E + +I+D+     NN Q W  ++ HS
Sbjct: 255 RQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHS 287


>Z77136-8|CAB00885.2|  278|Caenorhabditis elegans Hypothetical
           protein ZC376.8 protein.
          Length = 278

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 55  HIWALLGLWQLMSTMYRCASSRPRR 129
           H+W+LLGL  +  T++ C   + ++
Sbjct: 17  HLWSLLGLVSIAMTVFVCGKPKKKK 41


>Z50859-8|CAN99723.1|  549|Caenorhabditis elegans Hypothetical
           protein T26C5.3d protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 326
           W +   LA  DW+  K+ ++KGT  I+    T  L  +  +G
Sbjct: 455 WPVTVVLAVTDWFTYKDCVVKGTKEILYACNTKVLADQCSSG 496


>Z50859-7|CAH04735.1|  574|Caenorhabditis elegans Hypothetical
           protein T26C5.3c protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 326
           W +   LA  DW+  K+ ++KGT  I+    T  L  +  +G
Sbjct: 480 WPVTVVLAVTDWFTYKDCVVKGTKEILYACNTKVLADQCSSG 521


>Z50859-4|CAA90730.1|  538|Caenorhabditis elegans Hypothetical
           protein T26C5.3b protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 326
           W +   LA  DW+  K+ ++KGT  I+    T  L  +  +G
Sbjct: 444 WPVTVVLAVTDWFTYKDCVVKGTKEILYACNTKVLADQCSSG 485


>Z50859-3|CAA90728.1|  632|Caenorhabditis elegans Hypothetical
           protein T26C5.3a protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 201 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 326
           W +   LA  DW+  K+ ++KGT  I+    T  L  +  +G
Sbjct: 538 WPVTVVLAVTDWFTYKDCVVKGTKEILYACNTKVLADQCSSG 579


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 131 RRLGLLEAHRYIVDINCQRPNNAQMWFCALNHS 33
           R+L L E + +I+D+     NN Q W  ++ HS
Sbjct: 255 RQLTLSEIYNWIMDLFPYYQNNQQRWQNSIRHS 287


>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 8   KKYGWCTDKSDSG-HKTTFGH 67
           +KYGW T+K DS   KT  GH
Sbjct: 117 QKYGWKTNKLDSALFKTGIGH 137


>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
           protein C52E12.4 protein.
          Length = 1487

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 275 PVGSFQ*NLLRQIPVPSGESTLQPPFMSTIQVCENP 168
           P+ S+    L ++P+PS   TL+ P + T  V + P
Sbjct: 234 PLESYIYWCLYEVPLPSPSMTLKIPLLGTTLVVQRP 269


>AF106584-1|AAC78221.1|  360|Caenorhabditis elegans Hypothetical
           protein F54A5.2 protein.
          Length = 360

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 245 RQIPVPSGESTLQPPFMSTIQVCE--NPIAI 159
           R  P P   ST+  PF STI V +   PIA+
Sbjct: 274 RHNPPPQHSSTVSDPFSSTIDVSDISPPIAV 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,382,065
Number of Sequences: 27780
Number of extensions: 206375
Number of successful extensions: 612
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)