Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30062
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   5.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   5.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.6  

>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 39  IQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 152
           IQ   P    IGP  +    +P    + + P   ++GP
Sbjct: 134 IQEQIPRFRHIGPSTLFPRFIPPNAYRLRPPLNPRFGP 171


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 39  IQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 152
           IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 138 IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 175


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +3

Query: 39  IQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGP 152
           IQ   P    IGPL      +P    + + P   ++GP
Sbjct: 379 IQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNPRFGP 416


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -3

Query: 345 TSFLLANLLLPCL 307
           T F   NL++PC+
Sbjct: 240 TLFYTVNLIIPCM 252


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 184 KFVKTRSLSASGPYLSFEGAWVC 116
           KFV  + L+   P+ S    W+C
Sbjct: 513 KFVPVKYLTYEYPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 184 KFVKTRSLSASGPYLSFEGAWVC 116
           KFV  + L+   P+ S    W+C
Sbjct: 566 KFVPVKYLTYEYPWWSHVLGWLC 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,250
Number of Sequences: 438
Number of extensions: 2362
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)