Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30059
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacter...    32   8.9  

>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
          Arabidopsis thaliana|Rep: Putative uncharacterized
          protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 2  KNAVNCAS*CELQDTFEHRHFERTLR 79
          KN   C + CELQ+   HR FER LR
Sbjct: 2  KNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 537

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 47  FEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 181
           F+HR  + ++R VE   GP+L EGR       H V+  A V R +
Sbjct: 212 FQHRRADGSIREVEVFAGPILLEGRSLLYSIVHDVSERARVEREL 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,620,011
Number of Sequences: 1657284
Number of extensions: 7450371
Number of successful extensions: 18149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18148
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)