Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30056
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       31   0.64 
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               30   1.5  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         29   2.6  
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 400 SYPLIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRT 531
           S+    +  +F    NF   +   F DL+  LPIFHI  ND+ T
Sbjct: 162 SHTATLIDNMFCNRPNFSQIADILFNDLSDHLPIFHICTNDENT 205


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 102 DAFVIVQEAGPVDRTRRPCRSQNCH 28
           D  +++Q+A PVDR R  C ++N H
Sbjct: 614 DGSIVIQKASPVDRGRYTCTARNSH 638



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 93  VIVQEAGPVDRTRRPCRSQNCH 28
           +++Q+A PVDR R  C ++N H
Sbjct: 838 IVIQKASPVDRGRYTCTARNSH 859


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +1

Query: 274 NVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGNNFD 453
           NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++ NN  
Sbjct: 159 NVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQVNNIG 213

Query: 454 LCSAF 468
            C +F
Sbjct: 214 RCFSF 218


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 521 SLGLMWKMGRPPARSANVKAEHKSKLL 441
           S+G +W+ G  PA  ++V  +H S++L
Sbjct: 152 SMGFLWRSGLKPAAQSSVSVQHISQIL 178


>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 63  DLQALLLGRLQMHLRPPGRELEMYPGQRADPLAVRDTGVPV*NTILQRHLHR 218
           D+ A  + +  + LRPPGR     P +  D + V D+     N++ +R  HR
Sbjct: 42  DIVAKKMAKNLLRLRPPGRRQYAAPRRPTDVILVVDSS----NSLRRREFHR 89


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = -1

Query: 650  QPKSQSVLLMKDLASQFLFPKMCSLS*MCSR--VRSLDNHCAVRWSLGLMWKM-GRPPAR 480
            +P+   VLL + +AS+ + P  C+   M  R   RS   HC  +WS G + ++   P  +
Sbjct: 1506 RPEDSRVLL-ETMASRCV-PGTCANKEMALRNPERSSRGHCCRKWSTGRVTEVYPGPDGK 1563

Query: 479  SANVKAEHKSKLLPLSNTVVSLIKG*DPLM*KLKTTSSLN 360
              NVK +  +     + T +++I+  D  + ++ +    N
Sbjct: 1564 VRNVKVQTATGKYSRTVTKIAVIQAADEELLQINSNRDRN 1603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,653,346
Number of Sequences: 59808
Number of extensions: 465436
Number of successful extensions: 1551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)