Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30056
(665 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.37
M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee homeobox-... 23 3.5
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 22 6.0
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 22 6.0
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 22 6.0
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 6.0
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 22 6.0
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 6.0
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 8.0
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 8.0
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.37
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 196 YFNATYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 369
YF+ TYI + + H+K ++E + TL+ + + L + TL Q + E
Sbjct: 39 YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.37
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 196 YFNATYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 369
YF+ TYI + + H+K ++E + TL+ + + L + TL Q + E
Sbjct: 39 YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96
>M29489-1|AAA27724.1| 109|Apis mellifera protein ( Bee
homeobox-containing gene,partial cds, clone E60. ).
Length = 109
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 116 PRTRNVSRAEGRSPRST 166
PRTR V R++GR T
Sbjct: 1 PRTRRVKRSDGRGNGGT 17
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 660 SVVATEVAECSADEGPRQPVPLSEDVL 580
+ V T VA C + P P+P ++D L
Sbjct: 461 ATVGTTVAPCFEEPLPSLPLPGADDDL 487
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = -3
Query: 99 AFVIVQEAGPVDRTRRPCRSQNCHSGY 19
A +V ++ +++ ++CHSGY
Sbjct: 474 AVAVVSKSSSINKLEDLRNKKSCHSGY 500
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = -3
Query: 99 AFVIVQEAGPVDRTRRPCRSQNCHSGY 19
A +V ++ +++ ++CHSGY
Sbjct: 474 AVAVVSKSSSINKLEDLRNKKSCHSGY 500
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 618 GPRQPVPLSEDVLSLVN 568
GP+ P+ + D SL+N
Sbjct: 43 GPQSPLDMKPDTASLIN 59
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = -3
Query: 99 AFVIVQEAGPVDRTRRPCRSQNCHSGY 19
A +V ++ +++ ++CHSGY
Sbjct: 474 AVAVVSKSSSINKLEDLRNKKSCHSGY 500
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 6.0
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = -3
Query: 618 GPRQPVPLSEDVLSLVN 568
GP+ P+ + D SL+N
Sbjct: 43 GPQSPLDMKPDTASLIN 59
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.4 bits (43), Expect = 8.0
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -3
Query: 270 IKFADTAFVVVTGNEIMVDVGGVEVWYFKLEHRYLVLRGD 151
+KF+ F+V+ + M+D+G + ++H +V G+
Sbjct: 343 VKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGE 382
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 178 TPVSRTARGSALCPGYISSSRPGGR 104
TPV R A+ S+ Y S GGR
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSASGGR 1363
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,955
Number of Sequences: 438
Number of extensions: 4304
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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