Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30055
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 76 3e-15
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 31 0.15
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.62
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 0.62
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 26 4.4
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 26 4.4
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 7.7
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 76.2 bits (179), Expect = 3e-15
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +2
Query: 161 LKNVKKVAFSSDTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 328
L N+ + S+ N M E D+++ + E R A RL YQSRKRG+LE DL
Sbjct: 7 LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66
Query: 329 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEF-DNEIMDLLKKH 505
LLS FAK ++ + YD+L++ P DWDI YW ++ PE++ +++ L K+
Sbjct: 67 LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124
Query: 506 AKNEDKIALRQP 541
+++ LR P
Sbjct: 125 CRSQRNHTLRMP 136
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 30.7 bits (66), Expect = 0.15
Identities = 26/93 (27%), Positives = 36/93 (38%)
Frame = +2
Query: 131 TRTLNLAYNALKNVKKVAFSSDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 310
TR L LK+++ + D MD ++ + + LEKRKA LH Q K
Sbjct: 7 TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63
Query: 311 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINS 409
LL + L + Q Y L NS
Sbjct: 64 QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS 94
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 28.7 bits (61), Expect = 0.62
Identities = 18/76 (23%), Positives = 40/76 (52%)
Frame = +2
Query: 293 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEF 472
+ + ++ +++ F K++ F K+ + + I S +++ +IF W +++ EE
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246
Query: 473 DNEIMDLLKKHAKNED 520
DNE ++ KK + ED
Sbjct: 247 DNEQVNDEKKQSSEED 262
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.7 bits (61), Expect = 0.62
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 359 NGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDKIALRQ 538
NG E + + R ++ P+ ++ Y ++ + +EF ++ K+ KNE +IA
Sbjct: 129 NGTFEYKEYISLRQVDDPNEGYETVYDMMNLQDHIDEFQKQLFSNFKRSNKNECRIAALV 188
Query: 539 P 541
P
Sbjct: 189 P 189
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 134 RTLNLAYNALKNVKKVAFSSDTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 307
R+L YN + SS +T N + ++P E+++ KRK + +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 541 GLSECNFIFIFSMFFEKVHNFIVK 470
GLS NF+ FS FFE + +F++K
Sbjct: 289 GLS--NFVNSFSSFFELISHFLIK 310
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 4.4
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +2
Query: 173 KKVAFSSDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 343
+KV FSS N D+TY K Q L K A L Q K+ +L DL L
Sbjct: 42 EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93
Query: 344 AKKYLNGFNE--KQTMMYDRLINSPSN 418
+ Y G ++ K Y +N N
Sbjct: 94 SDCYAKGMDDIMKHVATYTATMNERMN 120
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 239 YDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKY 355
Y+V KQQ + + + ++KRG+ N+ L AKKY
Sbjct: 783 YNVAKQQRAYEEEINRIWNAQKRGLSINN--LEELAKKY 819
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,389
Number of Sequences: 5004
Number of extensions: 48879
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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