Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30055
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34) 132 1e-31
SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27) 31 0.65
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09) 30 1.1
SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13) 29 2.0
SB_53690| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_42535| Best HMM Match : Bac_transf (HMM E-Value=2.7) 29 2.0
SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002) 29 2.6
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_39545| Best HMM Match : TolA (HMM E-Value=0.12) 28 4.6
SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5) 27 8.0
>SB_31477| Best HMM Match : TPR_div1 (HMM E-Value=3.5e-34)
Length = 162
Score = 132 bits (320), Expect = 1e-31
Identities = 58/105 (55%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Frame = +2
Query: 230 IPLYDVEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINS 409
IP Y V + + E ++ARL YQSRKRGMLEN LLLSTFA ++L+ F++ YD LIN
Sbjct: 46 IPNYKVREDETTEMKRARLLYQSRKRGMLENGLLLSTFADRHLDEFDDDLLQQYDYLINQ 105
Query: 410 PSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDK-IALRQP 541
P+NDWD++YWI E KPTP+E+++ +MD++K AKNED+ + RQP
Sbjct: 106 PTNDWDLYYWITENKPTPDEYNSPVMDMIKDFAKNEDRDVRTRQP 150
>SB_36078| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-27)
Length = 611
Score = 31.1 bits (67), Expect = 0.65
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Frame = +2
Query: 143 NLAYNALKNVKKVAFSSDT----TNNMDTTY--MEIPLYDVEKQQPLEK-RKARLHYQSR 301
N + +K + +A SD TN + TY ++ LYD+E+Q L + YQS+
Sbjct: 220 NFWHRKIKQILDLAGRSDIWLTDTNTPEATYSFLQQRLYDIEQQTWLSSIQNGNRKYQSQ 279
Query: 302 KRGMLE-NDLLLSTFAKKYLN---GFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPE- 466
K + LS + YL + + ++ RL N Y KKP
Sbjct: 280 KNKLRTLRKFKLSHNLEDYLTDVKNIDHRISLTKFRLSNHKLAIETGRYEKPYKKPNDRK 339
Query: 467 -----EFDNEIMDLLKKHAKNEDKIALRQPRSTFKT 559
++DN + LL KHA + K+ +P++ + T
Sbjct: 340 CLVARQYDNTLKALLDKHAPLKAKLVTIRPKAAWYT 375
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 30.7 bits (66), Expect = 0.86
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 317 ENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLL 496
E DL FAKK +N F + +++ D+L N V ++DN + LL
Sbjct: 401 ELDLCKPQFAKKVVN-FKKLRSVDIDQLSEDLLNSEHFQNQQVNINNLVIKYDNTLKALL 459
Query: 497 KKHAKNEDKIALRQPRSTFKT 559
KHA + K+ +P++ + T
Sbjct: 460 DKHAPLKAKLVTIRPKAAWYT 480
>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
Length = 1703
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 368 NEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDKIA 529
+E + YDRL++ DW + KK T E F ++ D L KH + K+A
Sbjct: 353 HEVYRVFYDRLVDDKDRDW---LHTLLKKVTKEHFKDD-FDGLFKHLSSSGKVA 402
>SB_29046| Best HMM Match : Alpha_kinase (HMM E-Value=8.4e-13)
Length = 1054
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +2
Query: 245 VEKQQPLEKRKARLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMM 388
+ + +PL + A+ +Y+ + + D+L A+ Y+ FN+K M+
Sbjct: 900 INQDEPLARYVAKQYYEEQPIKQYQQDVLSQMTARSYVAQFNQKLFML 947
>SB_53690| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 317 ENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLL 496
E DL FAKK +N F + +++ D+L N V ++DN + LL
Sbjct: 11 ELDLCKPQFAKKVVN-FRKLRSVDIDQLSEDLLNSELFQNQQVNINNLVIKYDNTLKALL 69
Query: 497 KKHAKNEDKIALRQPRSTFKT 559
KHA + K+ +P++ + T
Sbjct: 70 DKHAPLKAKLVTIRPKAAWYT 90
>SB_42535| Best HMM Match : Bac_transf (HMM E-Value=2.7)
Length = 245
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +2
Query: 317 ENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLL 496
E DL FAKK +N F + +++ D+L N V ++DN + LL
Sbjct: 67 ELDLCKPQFAKKVVN-FRKLRSVDIDQLSEDLLNSELFQNQQVNINNLVIKYDNTLKALL 125
Query: 497 KKHAKNEDKIALRQPRSTFKT 559
KHA + K+ +P++ + T
Sbjct: 126 DKHAPLKAKLVTIRPKAAWYT 146
>SB_21134| Best HMM Match : PAN (HMM E-Value=0.0002)
Length = 518
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 153 IMRSKMSRKWLFQVIPPTTWIQPTWRFLF 239
+ ++ R+ V PP T I P WRFLF
Sbjct: 139 VFAQQVPREESLYVFPPFTLIGPLWRFLF 167
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 446 EKKPTPEEFDNEIMDLLKKHAKNEDKIALRQPRSTFKTK 562
EK+P P++ E+ LL++H ++++A +QP TK
Sbjct: 5863 EKEPIPDDDYEEVHRLLEEHKVFQEEMAKKQPSYDRLTK 5901
>SB_39545| Best HMM Match : TolA (HMM E-Value=0.12)
Length = 1189
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 458 TPEEFDNEIMDLLKKHAKNEDKIALR 535
TPE+ DN I+ K+H + ++K+AL+
Sbjct: 1159 TPEDMDNIILTGDKRHRETQEKMALK 1184
>SB_41862| Best HMM Match : POR_N (HMM E-Value=3.5)
Length = 994
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 131 TRTLNLAYNALKNVKKVAFSSDTTNNMDTTYMEIPLYDVE--KQQPL-EKRKARLHYQ 295
+ TL +A A ++ +++ SSD + + Y+ +PL + KQ+ L E+ KAR Y+
Sbjct: 211 SETLRVAAGACRSGRRLRGSSDGREGVCSRYLLLPLEIIPAVKQRALPERHKARAPYR 268
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,255,715
Number of Sequences: 59808
Number of extensions: 317511
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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