Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30055
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51040.1 68418.m06327 expressed protein                             48   6e-06
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains...    29   2.1  
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    29   2.8  
At1g60300.1 68414.m06790 apical meristem formation protein-relat...    29   2.8  
At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    27   6.5  
At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)...    27   6.5  

>At5g51040.1 68418.m06327 expressed protein
          Length = 188

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
 Frame = +2

Query: 239 YDVEKQQPLEKRKA--RLHYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSP 412
           +D++      KR+   RL Y+S++RG LE DL+L  + ++ +N  +E        ++N  
Sbjct: 59  FDIDLSNEENKRRTINRLLYRSKQRGFLELDLVLGNWVEENVNSMDENGVKSLIHVLNLE 118

Query: 413 SNDWDIFYWIVEKKPTPEEFDN---------EIMDLLKKHAKNEDKIALRQP 541
           +   D++ W+ E++  PE   +         ++M  L KHA  E + A  QP
Sbjct: 119 NP--DLWKWLTEQEQPPEAVSSNPVFSALHEKVMKNLNKHAAPETRAAAGQP 168


>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 530

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 12/149 (8%)
 Frame = +2

Query: 146 LAYNALKNVKKVAFSSDTTNNMDTTY--MEIPLY-DVEKQQPL---------EKRKARLH 289
           L  N  KN K + FS D    ++  +  +++  Y +V+  QP          E+R   L 
Sbjct: 88  LKANETKNSKSLVFSMDDHEEIEDEFEGVKVKWYSNVKVIQPQSNYGQRSSEERRHFTLS 147

Query: 290 YQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEE 469
           +  R RGM+    L     +    G   ++  +Y    +     W    W       P  
Sbjct: 148 FHRRHRGMIIETYLDHVLREGKAIGLMNRERKLYTNNSSQEWYPWRSGKWSNVPFHHPAT 207

Query: 470 FDNEIMDLLKKHAKNEDKIALRQPRSTFK 556
           F+   MD  KK    +D I   + +  +K
Sbjct: 208 FETLAMDPEKKEGIKKDLIKFSKGKDYYK 236


>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 490 VHNFIVKFFRSWLL-FNYPIEYVPIVAG*VYETIVH 386
           V  F ++ FR+ +  FNY +EY+P + G  Y+ + +
Sbjct: 467 VEGFCIEVFRASISPFNYEVEYIPWLNGSNYDNLAY 502


>At1g60300.1 68414.m06790 apical meristem formation protein-related
           contains similarity to CUC1 [Arabidopsis thaliana]
           gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
           gi|1279640|emb|CAA63101
          Length = 322

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 287 HYQSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDW 424
           H+ +    +LEN+LL S     YL+   E+     D ++ S  N+W
Sbjct: 161 HFYTTSESVLENELLPSY--GYYLSNTQEEDEFYLDAIMTSEGNEW 204


>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +2

Query: 413 SNDWDIFYW-IVEKKPTPEEFDNEI---MDLLKK--HAKNEDKIALRQPRS 547
           SND+DI  W +V K PT +    +I   +DL  +    K E++IA    RS
Sbjct: 203 SNDFDIAIWVVVSKNPTVKRIQEDIGKRLDLYNEGWEQKTENEIASTIKRS 253


>At4g00480.1 68417.m00066 myc-related transcription factor (MYC1)
           identical to ATMYC1 GI:1853965 from [Arabidopsis
           thaliana]
          Length = 526

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +2

Query: 131 TRTLNLAYNALKNVKKVAFS-SDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQ 295
           T  ++  +N L+N+K      S   +N D   MEI + + + Q PL      LHY+
Sbjct: 200 TELISEDHNLLRNIKSCLMEISAHQDNDDEKKMEIKISEEKHQLPLGISDEDLHYK 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,588,487
Number of Sequences: 28952
Number of extensions: 230463
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)