Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30054
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 184 1e-47
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 182 5e-47
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 174 8e-45
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 30 0.31
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 28 1.3
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 6.8
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 9.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 184 bits (447), Expect = 1e-47
Identities = 89/172 (51%), Positives = 117/172 (68%)
Frame = +3
Query: 108 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 287
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 288 EIRPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 467
+I R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 468 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAAL 181
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 182 bits (442), Expect = 5e-47
Identities = 85/165 (51%), Positives = 114/165 (69%)
Frame = +3
Query: 129 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPARQ 308
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I AR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 309 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 488
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 489 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAAL 180
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 174 bits (424), Expect = 8e-45
Identities = 80/165 (48%), Positives = 113/165 (68%)
Frame = +3
Query: 129 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPARQ 308
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IR R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 309 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 488
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 489 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEAL 179
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +3
Query: 294 RPARQA--RNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 428
RP R+A N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1126 RPFREALSENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 210 SAIKKKREIFKRAEQYVKEYRIKERDEIRPARQARNRGN 326
+++K+ REI ++ E+ +R+K ++ + + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 91 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 264
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +3
Query: 477 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 608
N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,060
Number of Sequences: 5004
Number of extensions: 49050
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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