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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30054
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   191   4e-49
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   187   5e-48
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   112   3e-25
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374...    29   2.3  
08_02_0077 - 11979497-11979654,11980012-11982178                       29   3.0  
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647...    29   3.0  
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898...    29   4.0  
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885...    28   5.3  
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268...    28   7.0  
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852...    27   9.2  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  191 bits (465), Expect = 4e-49
 Identities = 89/170 (52%), Positives = 122/170 (71%)
 Frame = +3

Query: 114 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 293
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY  +E++ +
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66

Query: 294 RPARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 473
           +  R+AR +G +YV  EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67  QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126

Query: 474 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
           +NMLR  EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGL 176


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  187 bits (456), Expect = 5e-48
 Identities = 85/164 (51%), Positives = 120/164 (73%)
 Frame = +3

Query: 126 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRPAR 305
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY  +E++ ++  R
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69

Query: 306 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 485
           +AR +G +YV  E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70  EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129

Query: 486 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEK 617
           R  EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEE 173


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  112 bits (269), Expect = 3e-25
 Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
 Frame = +3

Query: 99  KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 278
           +E +++LP V E+VLK             +    +R       +   KR E +V+E+R K
Sbjct: 3   EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62

Query: 279 ERDEIRPARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 449
           E D +R   + R +     P E   +KL F IRI G   + P +R++L+  RL Q+  GV
Sbjct: 63  ELDFVR--MKTRLKVRKLPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120

Query: 450 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKKL 623
           F++   AT+  L + EP+I +G+PNLK+V++L+YK+G   L  +  P+TSN ++EK L
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKAL 178


>10_06_0101 +
           10736987-10737100,10737263-10737301,10737397-10737474,
           10737539-10737685,10737781-10737888,10738115-10738449,
           10738572-10739544,10739702-10739980
          Length = 690

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 192 TLKRRSSAIKKKREIFKRAEQYVKEYRIKE 281
           TL+ R+  IK KRE+F+R     KE+RI+E
Sbjct: 149 TLETRTDPIKLKREVFRRKR---KEHRIQE 175


>08_02_0077 - 11979497-11979654,11980012-11982178
          Length = 774

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 136 QCSSIVRGERLFALGDYRLR*RGVL-LPSRRRGKSSRGLNSTSRNTASRNVMKSDQPDKH 312
           QC S + G+ L  + DY    +  L +  +  G++  G      N   +  +++DQP+ +
Sbjct: 186 QCDSAIEGQELIHVEDYEQSEKTELKINGQENGENRAGKEQFDCNVPVKQEIRTDQPEAN 245

Query: 313 AI 318
            +
Sbjct: 246 GV 247


>03_06_0596 +
           34964109-34964189,34964286-34964481,34964567-34964775,
           34964868-34964970,34965053-34965227,34965617-34965883,
           34965966-34966311,34966396-34966533,34966645-34966770,
           34966866-34967078,34967171-34967462,34967559-34967755,
           34967844-34968194,34968290-34968874
          Length = 1092

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 219 KKKREIFKRAEQYVKEYRIKERDEIRPARQARNRG 323
           KKKR  FKRAE     Y + E DE  P  +    G
Sbjct: 689 KKKRLFFKRAENQSPAYALGEIDEGAPGAENEKAG 723


>07_03_0123 -
           13688562-13689146,13689233-13689583,13689665-13689861,
           13689954-13690072,13690103-13690245,13690332-13690544,
           13690649-13690774,13690891-13691028,13691109-13691454,
           13691532-13691798,13691939-13691983,13692148-13692349,
           13692405-13692507,13692599-13692810,13692891-13693113,
           13693211-13693291
          Length = 1116

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 219 KKKREIFKRAEQYVKEYRIKERDEIRPARQARNRG 323
           KKKR  FKRAE     Y + E +E  P  +    G
Sbjct: 713 KKKRSFFKRAENQSPAYALGEIEEGAPGAENEKAG 747


>12_02_0398 -
           18586985-18587480,18587669-18587687,18588317-18588544,
           18589699-18589966
          Length = 336

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 337 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 435
           PG+ NW   S  +V TK  R+S +  N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132


>01_06_0457 -
           29524544-29525962,29526518-29526606,29526841-29526892,
           29527573-29527677,29528181-29528208,29528279-29528343,
           29528808-29528880,29528932-29529113
          Length = 670

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 500 LHCLGIPQLKECP*VSIQTWIRQAEW 577
           LHC G+PQ+K        +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134


>03_02_0651 +
           10183050-10184167,10184350-10184974,10185023-10185208,
           10185325-10185660
          Length = 754

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 316 IVATTTFPGKPNWHLSSESVVSTKFH 393
           +V    +P   NWHLSS S +  K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,696
Number of Sequences: 37544
Number of extensions: 316194
Number of successful extensions: 782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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