Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30053
         (490 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6BNT9 Cluster: Similar to CA2484|IPF9846 Candida albic...    35   0.84 
UniRef50_Q3EQF5 Cluster: Sensor protein; n=1; Bacillus thuringie...    34   1.5  
UniRef50_Q9QME4 Cluster: Gag polyprotein; n=78; root|Rep: Gag po...    33   4.5  
UniRef50_Q98RW4 Cluster: Putative uncharacterized protein orf556...    33   4.5  
UniRef50_UPI0000D55906 Cluster: PREDICTED: similar to SGT1 prote...    32   6.0  
UniRef50_A0CXD0 Cluster: Chromosome undetermined scaffold_30, wh...    32   7.9  

>UniRef50_Q6BNT9 Cluster: Similar to CA2484|IPF9846 Candida albicans
           IPF9846 unknown function; n=1; Debaryomyces
           hansenii|Rep: Similar to CA2484|IPF9846 Candida albicans
           IPF9846 unknown function - Debaryomyces hansenii (Yeast)
           (Torulaspora hansenii)
          Length = 827

 Score = 35.1 bits (77), Expect = 0.84
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = -3

Query: 413 LINKNNYKKKFSKINSYHMITVVFRMVFLGKCLPS*ITCLIRCF 282
           L+ + +Y  +FS++NS HMI  + R++ + K +    TC++ C+
Sbjct: 394 LLYRKSYNLEFSQVNS-HMINYLMRLMLITKNVDLITTCIVECY 436


>UniRef50_Q3EQF5 Cluster: Sensor protein; n=1; Bacillus
           thuringiensis serovar israelensis ATCC 35646|Rep: Sensor
           protein - Bacillus thuringiensis serovar israelensis
           ATCC 35646
          Length = 472

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 318 TFSQKNHTEYYCNHMVRIYFGKLFFVIVFIDQNVFITFLMLNYKVTRVVIEL 473
           TFS KN  E Y     +I+F  +F   VF   NV+I    +  K+TR + +L
Sbjct: 148 TFSDKN--EEYVYVFYKIFFSTIFLFFVFFSMNVYIFSRQIARKITRPLDKL 197


>UniRef50_Q9QME4 Cluster: Gag polyprotein; n=78; root|Rep: Gag
            polyprotein - Avian endogenous retrovirus EAV-HP
          Length = 1125

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = -3

Query: 353  TVVFRMVFLGKCLPS*ITCLIRCFGDCLLIIM 258
            T++F ++ +  CL + I CLI+CF DCLL  M
Sbjct: 1078 TLLFALLVIA-CLLAIIPCLIKCFQDCLLRTM 1108


>UniRef50_Q98RW4 Cluster: Putative uncharacterized protein orf556;
           n=1; Guillardia theta|Rep: Putative uncharacterized
           protein orf556 - Guillardia theta (Cryptomonas phi)
          Length = 556

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 425 YKDILINKNNYKKKFSKINSYHMITVVFRMVFLGK 321
           YKDI +NKN  KKK    N Y++  + F++  + K
Sbjct: 287 YKDIFLNKNIKKKKTKSKNFYYIWKITFKISCISK 321


>UniRef50_UPI0000D55906 Cluster: PREDICTED: similar to SGT1 protein
           homolog ecdysoneless; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to SGT1 protein homolog ecdysoneless
           - Tribolium castaneum
          Length = 636

 Score = 32.3 bits (70), Expect = 6.0
 Identities = 23/80 (28%), Positives = 40/80 (50%)
 Frame = -2

Query: 402 KQLQKKVFQNKFLPYDYSSIPYGFSGKMSAILNHVFNSMLRGLPANNHVTNHSRDQRLII 223
           K L++K  Q KF+  + +S    F+ K+S+ LNHV  S + G+   +   + +R  R + 
Sbjct: 425 KMLEEKYGQKKFVTVNNNSDAASFTEKISSFLNHV--SDIDGVEHPDLDNSPTRPPRGVK 482

Query: 222 CANVQSYTFAIKEKATKNDR 163
                S+    K + T N+R
Sbjct: 483 KRTKVSFASGTKTETTANNR 502


>UniRef50_A0CXD0 Cluster: Chromosome undetermined scaffold_30, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_30,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 312

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 196 CHKREGNEK*PLKSESPRSAHIQFKKKTLNL-TRLNYCN 83
           CH ++ N K   K++S +   +QF +K L L TR NYC+
Sbjct: 47  CHNQKCNNKGDRKTKSRKGEALQFCEKCLRLYTRGNYCD 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,305,424
Number of Sequences: 1657284
Number of extensions: 7619759
Number of successful extensions: 17843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17838
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)