Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30053
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0452 + 20931484-20933872,20933950-20934074                       28   3.5  
03_06_0289 - 32870581-32871238,32871271-32871275                       27   6.1  
01_05_0271 + 20276965-20278674                                         27   6.1  

>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 324 KMSAILNHVFN--SMLRGLPANNHVTNHSRDQRLIICANVQSYTFAIKEKATKNDR*KAS 151
           K++A  N  FN   ++ GL  NN + +    +   IC +  SY F   +K   +DR +++
Sbjct: 599 KLTAFHNINFNYQDIICGLADNNLIGSGGSGKVYKICLHNNSYRFVAAKKIV-SDRSRSN 657

Query: 150 HLDRH 136
            L++H
Sbjct: 658 MLEKH 662


>03_06_0289 - 32870581-32871238,32871271-32871275
          Length = 220

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -3

Query: 431 KSYKDILINKNNYKKKFSKI--NSYHMITVVFRMVFLGKCLPS*ITCLIRCFGDCLLI 264
           K    + IN NN+  K ++   NS   + V+  +  LG CLPS I  +     + +L+
Sbjct: 17  KKIDALFINNNNFDFKLTESFSNSTASVIVLANLPKLGGCLPSSIGDMAETLNELVLL 74


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 120 FLNCMCADLGDSLFSGHFSLPSLLWQRYMIGRLH 221
           +  C C D G SLF        + W   + G LH
Sbjct: 265 YFRCGCMDSGHSLFGNLLDADLVTWSSLITGLLH 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,576,085
Number of Sequences: 37544
Number of extensions: 184482
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)