Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30052
         (606 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0TTH9 Cluster: Transcriptional regulator, MarR family/...    36   0.98 
UniRef50_A2FB27 Cluster: GTPase-activator protein, putative; n=1...    33   5.2  

>UniRef50_Q0TTH9 Cluster: Transcriptional regulator, MarR
           family/choline/ethanolamine kinase; n=4;
           Clostridium|Rep: Transcriptional regulator, MarR
           family/choline/ethanolamine kinase - Clostridium
           perfringens (strain ATCC 13124 / NCTC 8237 / Type A)
          Length = 622

 Score = 35.5 bits (78), Expect = 0.98
 Identities = 24/73 (32%), Positives = 39/73 (53%)
 Frame = +1

Query: 166 VFIILYKKNLLYLDVESIIRLLEKYA*DLHKFSIVS*F*RMGHLLRSAFVLGVGGKDDEG 345
           V I + K+N+ Y   E+ I LLE    D  K + +S      H ++ A +LG GGK D G
Sbjct: 48  VKIDIDKRNVKYELTEAGIALLENSL-DKVKSTKLSIHKHKYHKVKQAVILGAGGKGDFG 106

Query: 346 KNKRYIQITKFTL 384
           K   ++++ +F +
Sbjct: 107 KPSGFLELEEFRI 119


>UniRef50_A2FB27 Cluster: GTPase-activator protein, putative; n=1;
            Trichomonas vaginalis G3|Rep: GTPase-activator protein,
            putative - Trichomonas vaginalis G3
          Length = 2146

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = -2

Query: 266  MLNLCKSQAYFSNNRIILSTSKYNRFFLYNIIKT 165
            +LN+C SQ+ FS N +I +T+K+ R F  + +KT
Sbjct: 1932 LLNICSSQSEFSINMVIETTNKFIRNFGISKLKT 1965


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,265,879
Number of Sequences: 1657284
Number of extensions: 7944697
Number of successful extensions: 16984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16980
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)