Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30052
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|c...    27   2.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   6.5  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   8.6  

>SPCC1450.13c |||riboflavin synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 354 FILTFVIFSSYAEHEGTSQEVTH 286
           F+L ++++  Y   +GTS  +TH
Sbjct: 129 FVLKYIVYKGYIALDGTSLTITH 151


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -2

Query: 242 AYFSNNRIILSTSKYNRFF 186
           +Y+ N+ II++  +YN+FF
Sbjct: 159 SYYGNSSIIMNAVEYNQFF 177


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 144 FLVIVDFCFYYII*KKSVIFRCRK 215
           FLVI+ FCFY +  +K +  R  K
Sbjct: 6   FLVIIAFCFYVLYLEKIIHTRPHK 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,083
Number of Sequences: 5004
Number of extensions: 36861
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)