Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30052
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0296 + 22046649-22048202,22048524-22048703,22048811-220488...    27   8.7  

>11_06_0296 +
           22046649-22048202,22048524-22048703,22048811-22048860,
           22049443-22049564,22051007-22051119,22051227-22051436,
           22052152-22052265,22052529-22052658,22053010-22053143,
           22053997-22054077,22054181-22054267
          Length = 924

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 12  SFLRLRKRNSLTICSRDVAALPYIPTRAVNFIDGSNFYIFILC 140
           S + +R +  + +C+R   +     T AV F  G+N + F++C
Sbjct: 352 SLISVRVKPLIQLCNRTDMSSAKTITDAVRFFKGNNSWSFLIC 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,771,868
Number of Sequences: 37544
Number of extensions: 179798
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)