Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30052
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine r...    27   7.9  

>AC006790-13|AAF60737.2|  351|Caenorhabditis elegans Serpentine
           receptor, class z protein5 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 21  RLRKRNSLTICSRDVAALPYIPTRAVNFID-GSNFYIFILCNFLVIVDFCFYYII*KKSV 197
           RL    ++TIC       P+I    V  ID G   ++ + C  L +++F    ++ + S 
Sbjct: 247 RLIMYQAITICVSKFVTFPFIVFNGVMIIDQGYYGFLKLACIMLSVINFATTPLLIQISY 306

Query: 198 IFRCRKYYSIIREVRLRF 251
           I+ C K    I +  L F
Sbjct: 307 IY-CNKRNVKIMQSLLTF 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,900
Number of Sequences: 27780
Number of extensions: 197792
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)