Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30051
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    31   0.18 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   1.7  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   3.8  
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    26   5.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   6.7  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +2

Query: 512 LFCHVPSGFGVSSPTTVFFSSAMTCAFLLLTWALAP 619
           LFC V + + VS   T+  +S M+  FLL T ALAP
Sbjct: 481 LFC-VLTTYNVSLSQTILLTSIMSVVFLLQTGALAP 515


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 613 QSPS*KKEGTCHSAREKYCSRGAHSKARWYVAKKISENALWTNVTVP 473
           +SP     G  +S R KY S G +SKA+ Y AK+ S +   +++  P
Sbjct: 429 RSPKAGSAGKENSWRSKYLSEGKNSKAK-YTAKQPSYDRAGSSLASP 474


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 600 RRRKAHVIAL-EKNTVVGELTPKPDGTWQKRSLKTH 496
           RRRKA +    E++TVV E   KPDG  ++   K +
Sbjct: 546 RRRKARIQETSEESTVVNEPNEKPDGRSRRERKKVN 581


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 469 YLELLHSSTVRFQRSFLPRTIW-LWSELPYYSIFLERYDM 585
           Y+ L+ ++     RSF  R  W ++SE P Y +F +++D+
Sbjct: 443 YISLVETNEGSLTRSF-SRFSWDMFSESPVYQLFHKKFDV 481


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 465 WINSTPVAGGXMANASLFT 409
           WIN   V  G  +NASLFT
Sbjct: 128 WINEIAVENGSDSNASLFT 146


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 283 YSKKNINKDKQFLIYSQFDNRRQEQK 206
           + KK    D+QFL Y   DN R E K
Sbjct: 200 FKKKKNWSDEQFLQYVWSDNHRDEMK 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,637
Number of Sequences: 5004
Number of extensions: 48150
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)