Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30051
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4) 30 1.7
SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1) 29 2.3
SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 29 3.0
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1) 29 4.0
SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_19530| Best HMM Match : EMI (HMM E-Value=3.5) 28 7.0
SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 27 9.3
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 27 9.3
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 27 9.3
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 27 9.3
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18) 27 9.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 27 9.3
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 27 9.3
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 27 9.3
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 27 9.3
SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33) 27 9.3
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_25119| Best HMM Match : Ribosomal_S27 (HMM E-Value=9.4)
Length = 443
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 427 CHRTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
C +R + + LHS+ + F SF PR I W+ LP
Sbjct: 254 CVDPTNRSTRRHSLSFQQLHSNILSFNYSFFPRAIRAWNLLP 295
>SB_51257| Best HMM Match : Pox_F16 (HMM E-Value=4.1)
Length = 243
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 448 RSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
RSR N + S+ + SF PRTI W+ LP
Sbjct: 177 RSRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 211
>SB_16492| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 436 TARHRSR---VNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
T+R+ +R N Y L H+ ++ S+ PRT+ LW+ LP
Sbjct: 225 TSRYNTRNYHSNNYRLFFTHNQNY-YRNSYFPRTVKLWNSLP 265
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 202 QTFVLDVCCQIENRLKIVCLC*YFFYC 282
+TF++ + C +ENRLK +C +F C
Sbjct: 147 KTFLIYLFCAVENRLKFMCETDEYFPC 173
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 448 RSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
R++ + +Y +L++ T ++ SFLPR + LW+ LP
Sbjct: 181 RTQHSEFYT-ILNARTDIYKYSFLPRALRLWNNLP 214
>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
Length = 284
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 112 HKRYIK*IKKTLHTLHAMYLTHTRMHT 192
H RY ++ TL T H Y THT +HT
Sbjct: 138 HIRYTLHVRHTLRTTHTTYATHT-VHT 163
>SB_54752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 792
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 436 TARHRSRV---NPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
T+R+ +R N Y L H+ ++ S+ PRT+ LW+ LP
Sbjct: 722 TSRYNTRSYHPNNYRLFSTHNQNY-YRNSYFPRTVKLWNSLP 762
>SB_20783| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 436 TARHRSRV---NPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
T+R+ +R N Y L H+ ++ S+ PRT+ LW+ LP
Sbjct: 225 TSRYNTRSYHPNNYRLFSTHNQNY-YRNSYFPRTVKLWNSLP 265
>SB_37654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELPYYSIFLERYDMCLPSS 600
S N Y LL + F SF RTI +W+ LP ++F CLPS+
Sbjct: 809 SACNSYQFSLLPAKINAFLFSFYSRTIPVWNALP-QAVF-----PCLPSA 852
>SB_24816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 460 NPYYLELLHSSTVRFQRSFLPRTIWLWSELPYYSIFLERYDMCLPS 597
+P L+ T F+ SF P I +W+ LP +I D L S
Sbjct: 616 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTITQPTIDTFLAS 661
>SB_19530| Best HMM Match : EMI (HMM E-Value=3.5)
Length = 244
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 460 NPYYLELLHSSTVRFQRSFLPRTIWLWSELPYYSIFLERYDMCLPS 597
+P L+ T F+ SF P I +W+ LP +I D L S
Sbjct: 198 HPQRFALVSCKTNVFKESFFPHAIRMWNGLPVSTITQPTIDTFLAS 243
>SB_49942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 142 TLHTLHAMYLTHTRMHTIYCQT 207
T+H +HA Y +HT HTI T
Sbjct: 27 TVHHVHASYNSHTARHTIQYDT 48
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 142 TLHTLHAMYLTHTRMHTIYCQT 207
T+H +HA Y +HT HT++ T
Sbjct: 48 TVHHVHASYNSHTARHTMHYYT 69
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 853 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 886
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 433 RTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
R++R SR Y+ L ++ + F SF PRTI W+ LP
Sbjct: 1625 RSSRRHSRT--YHQ--LQANILAFNYSFFPRTIRTWNLLP 1660
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 133 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 166
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 219 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 252
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 178 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 211
>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
Length = 760
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 540 PKPDGTWQKRSLKTHCGR 487
P DG WQ+R ++ HC R
Sbjct: 81 PVADGYWQRRVIQVHCKR 98
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 433 RTARHRSRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
R++R SR Y+ L ++ + F SF PRTI W+ LP
Sbjct: 1071 RSSRRHSRT--YHQ--LQANILAFNYSFFPRTIRTWNLLP 1106
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 440 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 473
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 460 NPYYLELLHSSTVRFQRSFLPRTIWLWSEL 549
+P + ++ ++ T F+ SF+PR I LW+ L
Sbjct: 730 HPEHYDIPYARTNIFKYSFVPRAIRLWNSL 759
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 87 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 120
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 544 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 577
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 451 SRVNPYYLELLHSSTVRFQRSFLPRTIWLWSELP 552
SR N + S+ + SF PRTI W+ LP
Sbjct: 772 SRTNSSKYNQIQSNVLSHSYSFFPRTIRTWNLLP 805
>SB_5878| Best HMM Match : Tyrosinase (HMM E-Value=0.33)
Length = 292
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +2
Query: 2 FVSLFTKIARTEEYE-----ILHTYREYREEVHNANIFL 103
F++ F K+ + + Y+ I+ +RE+R +H+A FL
Sbjct: 51 FIAAFKKLTKDKRYKKEYDTIVRVHREHRTMIHSARYFL 89
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 142 TLHTLHAMYLTHTRMHTIYCQT 207
T+H +HA Y +HT HT++ T
Sbjct: 998 TVHHVHASYNSHTARHTMHYYT 1019
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 142 TLHTLHAMYLTHTRMHTIYCQT 207
T+H +HA Y +HT HT++ T
Sbjct: 1030 TVHHVHASYNSHTARHTMHYYT 1051
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,287,475
Number of Sequences: 59808
Number of extensions: 357124
Number of successful extensions: 903
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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