Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30051
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.7  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 427 CHRTARHRSR--VNPYYLELLHSSTVRFQRSFLPRTIW-LWSELPY 555
           C   AR++S      YYL  L  S +    S LP  I+ +WS  PY
Sbjct: 75  CVVIARNKSMHTATNYYLFSLAVSDLLLLISGLPPEIYYIWSHFPY 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 240 ILNLTTDVKNKSLTINS 190
           ILNL TD+ + S +I+S
Sbjct: 364 ILNLRTDISSSSSSISS 380


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 410 VNRDAFAIXPPATGVELIHTTWNCY 484
           +N ++F++     G+ L H T N Y
Sbjct: 239 INDESFSLQDGILGMALSHKTQNLY 263


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 316 KYNHNSVQTYNXN 354
           KYN+N+   YN N
Sbjct: 97  KYNYNNKYNYNNN 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,235
Number of Sequences: 438
Number of extensions: 3755
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)