Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30050
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    27   1.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   1.5  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    26   2.6  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   4.6  
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   4.6  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   4.6  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   4.6  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   8.0  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    24   8.0  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 139 SRKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
           S KK  ++KT +     P+K   + K  K+  +K+ +++  KK
Sbjct: 172 SSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKK 214


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 276 PHLLLYLGFSGPFSLVSFGHLFQASFFP 193
           P  LL+   S P+ L S G LF+ + FP
Sbjct: 228 PSYLLHFLESNPYFLKSLGSLFELALFP 255


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 RRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
           RRK  S+K  R RKK  LE+ +++   +  R   +K+
Sbjct: 366 RRKDDSRKRARDRKKERLEEASQKRLEEVNRLKNLKR 402


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 264 LYLGFSGPFSLVSFGHLFQASFFP 193
           + L + G F  + FG LF   FFP
Sbjct: 593 IILSWKGSFKAMVFGQLFADHFFP 616


>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 90

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 306 IH*NPGLYQYPHLLLYLGFSGPFSLVSFGHLFQASFFPGPLIFLT 172
           +H +P     P LL+YL       LVS   LF+++   G  +FL+
Sbjct: 20  MHLSPVSILSPVLLIYLVIHSQNELVSMSWLFRSTICFGVSLFLS 64


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
 Frame = +1

Query: 139  SRKKYGRRKTRSQKN*RPRKKRS------LEKMTKRNQRKRARK 252
            SR   GRR T    N RPR   S       E+  + N R+RAR+
Sbjct: 1553 SRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQ 1596


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 294 DSNEFLNVXILVEKIYNGYGLTDLNTDIEKKIALQKFL 407
           D N      I +    NGY LT    D+ KK +++ +L
Sbjct: 233 DGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYL 270


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 196 KKRSLEKMTKRNQRKRARKTQIKK 267
           KK+S E +TKR ++ + +K + K+
Sbjct: 192 KKKSTEPLTKRQRQNQQKKLRAKE 215


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = -1

Query: 410 LKEFL*SNFLFYVSIQIS*PVAIVDFFNKNXDIQEFIRILVYINIHIYFFIWVFLALFRW 231
           L  F+   FL Y    I   ++   F+N +    +F  +++ I++  Y   W++   F  
Sbjct: 364 LAGFILVMFLLYSLAPILFRMSSATFYNISLLTSDFWSLVIGIHVFGYHVYWLYPIAFVL 423

Query: 230 FLLVIF 213
            +L +F
Sbjct: 424 IILGLF 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,311
Number of Sequences: 5004
Number of extensions: 18591
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)