Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30050
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0596 - 26497863-26497913,26498010-26498081,26499015-264990... 31 0.36
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 31 0.36
02_04_0103 - 19768288-19768737 30 0.83
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 29 1.4
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 28 2.5
04_04_1558 - 34417801-34417920,34418930-34419051,34419458-344195... 28 3.3
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 5.8
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 27 7.7
>04_04_0596 -
26497863-26497913,26498010-26498081,26499015-26499093,
26499440-26499553,26499822-26499871,26500353-26500398,
26501100-26501719
Length = 343
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
R++ RRK R ++ R R+K + K +R+R RK + KK
Sbjct: 134 RRRRRRRKEREEEERRRRRKDKERRKRKEKERERERKKKEKK 175
Score = 27.1 bits (57), Expect = 5.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQI 261
RK RRK + ++ R RKK+ +K K ++ +K +
Sbjct: 152 RKDKERRKRKEKERERERKKKEKKKRRKEEKKNLGKKAAV 191
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 31.1 bits (67), Expect = 0.36
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 157 RRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIK 264
RRK S+K+ R KR ++ +R +RKR RK++ K
Sbjct: 274 RRKRHSKKDKHKRGKRKRDRRRERKRRKRDRKSKQK 309
>02_04_0103 - 19768288-19768737
Length = 149
Score = 29.9 bits (64), Expect = 0.83
Identities = 11/45 (24%), Positives = 27/45 (60%)
Frame = +1
Query: 145 KKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK*MWI 279
K+ +RK + +K + +KK+ +K K+ ++K+ +K ++ W+
Sbjct: 103 KRRRKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKKGMEADKWV 147
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/45 (28%), Positives = 28/45 (62%)
Frame = +1
Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK*MW 276
+KK ++K + +K + +KK++ +K K+ ++K+ +K KK W
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK---KKKRW 109
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARK 252
++K GR++ R ++ +KK+ +K KR+ + R RK
Sbjct: 563 KEKGGRKQKREEEEEEEKKKKKKKKKKKRSGKGRERK 599
>04_04_1558 -
34417801-34417920,34418930-34419051,34419458-34419531,
34419736-34419819,34419945-34420080,34420806-34420836,
34421228-34421386,34422375-34422595,34422685-34422898
Length = 386
Score = 27.9 bits (59), Expect = 3.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -3
Query: 342 CRFFQQEXRHSRIH*NPGLYQYPHLLLYLGFSGPFSLVSFGHLFQASFF-PGPLIFLTSC 166
CRF E HS + +Y PHL+ + + PF V + Q + PG + L+
Sbjct: 105 CRFVAHERLHSPVP----VYPPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFS 160
Query: 165 LPSPIFFPACI 133
+P I P+ +
Sbjct: 161 VPEGIKIPSSL 171
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 136 TSRKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQ 258
+S ++ RRK+ + R K +S K TKR R RK++
Sbjct: 213 SSDHRHKRRKSSKKDKHRSAKGKSKHKKTKRKSRGTKRKSK 253
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 264 EVNVDIDIDQDSNEFLNVXILVEKIYNG 347
+ N D+DID +SNE +V I V ++ NG
Sbjct: 23 DTNDDVDIDDESNEDTDVDINV-RVENG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,496,057
Number of Sequences: 37544
Number of extensions: 107613
Number of successful extensions: 344
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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