Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30050
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical...    31   0.33 
Z72517-1|CAA96691.1|  285|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical ...    28   3.0  
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    27   7.0  

>AL110500-21|CAI79283.1|  197|Caenorhabditis elegans Hypothetical
           protein Y87G2A.20 protein.
          Length = 197

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARK 252
           RKK  + K +++K+   RKK+S +K  K+  +K+A K
Sbjct: 58  RKKADKAKKKTKKDAAKRKKKSKDKKKKQKAQKKAEK 94


>Z72517-1|CAA96691.1|  285|Caenorhabditis elegans Hypothetical
           protein T28F4.1 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 210 QASFFPGPLIFLTSCLPSPIF 148
           Q+SFFPG   FL++  P PIF
Sbjct: 213 QSSFFPGDDYFLSNVGPEPIF 233


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 145 KKYGRRKTRSQKN*RPR---KKRSLEKMTKRNQRKRARKTQIKK 267
           KK  +RK ++ K  + +   KK SLEK  K++++K+  + + K+
Sbjct: 6   KKIDKRKKKADKKKKEKSTQKKNSLEKKNKKDKKKQKERKKKKE 49


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +1

Query: 145 KKYGRRKTRSQKN*RPR---KKRSLEKMTKRNQRKRARKTQIKK 267
           KK  +RK ++ K  + +   KK SLEK  K++++K+  + + K+
Sbjct: 6   KKIDKRKKKADKKKKEKSTQKKNSLEKKNKKDKKKQKERKKKKE 49


>AF026206-1|AAK39306.1|  260|Caenorhabditis elegans Hypothetical
           protein T28B4.2 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 148 KYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQI 261
           KY RR+ +  K     KK S ++ T  + RKR  + QI
Sbjct: 200 KYARRQRKLNKEIDRDKKESSQQSTGHSSRKRESRVQI 237


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +1

Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
           +KK  +++    K+ + R KRS E   +R++R++ +K + KK
Sbjct: 419 KKKSEKKRKHHSKSRKHRSKRS-ESREERHRRRKEKKREKKK 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,035,845
Number of Sequences: 27780
Number of extensions: 109662
Number of successful extensions: 488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)