Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30050
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   2.8  
At1g53800.1 68414.m06123 expressed protein                             27   3.7  
At5g34970.1 68418.m04127 hypothetical protein similar to At5g368...    27   4.9  
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    27   6.5  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   6.5  
At5g17660.1 68418.m02070 expressed protein contains Pfam profile...    26   8.6  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    26   8.6  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
           RK+  RR+   +K  +  KKR  E+  ++ + +R  K + KK
Sbjct: 789 RKEAKRRRKEEKKTRKEEKKRRREERHRKREERRGGKEKHKK 830


>At1g53800.1 68414.m06123 expressed protein
          Length = 568

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 157 RRKTRSQKN*RPRKKRSLEKMTKRNQRKRARKTQIKK 267
           RR+ R + +  PRKK   +K T+ ++ +R  + Q+ K
Sbjct: 289 RRRRRPRSDAEPRKKTPTKKSTRDSEFERQSQVQVVK 325


>At5g34970.1 68418.m04127 hypothetical protein similar to At5g36850,
           At1g27780, At2g05560, At3g42730, At1g52020, At2g14770,
           At3g43390, At3g24390, At1g34740, At1g25886, At4g03300,
           At4g05280
          Length = 478

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 142 RKKYGRRKTRSQKN*RPRKKRSLEKMTK 225
           RK++G+RK +      PR+KRS  K T+
Sbjct: 12  RKQHGQRKEKRVLRVSPRRKRSATKATE 39


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 273 VDIDIDQDSNEFLNVXILVEKIYNGYGLTDLNTDIEKKIAL 395
           +D+ I      F ++ IL+ K Y GYG+ D+N D+ K++ +
Sbjct: 387 MDMHIYMSFCNFPSLKILL-KNYLGYGVEDINGDVLKEMEM 426


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = +1

Query: 160 RKTRSQKN*RPRKKRSLEKMTK----RNQRKRARKTQIKK 267
           +K  +++  R RKKR LEK  +    R Q K + K+Q+ K
Sbjct: 128 KKIETEEERRLRKKRELEKQRQDEKHRQQMKNSHKSQMPK 167


>At5g17660.1 68418.m02070 expressed protein contains Pfam profile
           PF02390: Putative methyltransferase
          Length = 312

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 237 SLVSFGHLFQASFFPGPLIFLTSCLPSPIF 148
           ++VSF HL   S +PGPL  ++   P P F
Sbjct: 184 AMVSFEHLI--SSYPGPLEIVSILCPDPHF 211


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 146 KNMGEGRQEVKKIRGPGKKEAWKR*PKETSEKGPEKPK*RSK 271
           + +GE  ++ ++IR P  KEA K+ P   +  G  K + R K
Sbjct: 149 EELGEKGEDEEEIRVPETKEAGKKRPIVETRDGEGKERKRDK 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,629,507
Number of Sequences: 28952
Number of extensions: 95071
Number of successful extensions: 321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)