Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30049
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    29   0.34 
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    28   0.44 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   1.0  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   3.1  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   3.1  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   4.1  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    25   4.1  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   5.5  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    25   5.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    24   9.6  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 270 GNEIMVDVGGVEVWYFKLEHRYLVLR 193
           G+E++V   G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 142 DHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFY 306
           + + + +K I   G   S Y + +FQ + P F    +        HD C VS  Y
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDY 240


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 94   SPIYRPCFLDDYKCISDHLAANSKCIPGRGQIPS 195
            +P Y P FL+     SD +    + +P RG I S
Sbjct: 1362 TPSYTPSFLEGSPVFSDEILNRGEYMPHRGSISS 1395


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +1

Query: 193 SQYEIPVFQFEIPYFN--ATYIDHNLITRNHDKCRVSEF 303
           S Y + + +F    F+  +T  D NL +RN DK  +  F
Sbjct: 209 SNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYF 247


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 289 RVSEFYDNVRTLKTVL-TVDC 348
           R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 107 GPASWTITNASPTTW 151
           G A W IT A+P+ W
Sbjct: 272 GDAEWNITGAAPSEW 286


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 144 PPGRELEMYPGQRADPLAVRDTGVPV 221
           PP  +   YP     PLA++  G P+
Sbjct: 407 PPQAQFSPYPAVAPSPLALQTRGAPI 432


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 205 SRTARGSALCPGYISSSRPGGRRCICNRPRSRACRS 98
           S  A G+ L PG  +      RRCI NR R   CR+
Sbjct: 330 SEYALGNLLAPGAFA------RRCIMNRLRMLKCRT 359


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 169 YISSSRPGGRRCICNRPRSRAC 104
           +++ SRP G  C+  R    AC
Sbjct: 165 FVTESRPSGSGCLMTRTLKNAC 186


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 262 LITRNHDKCRVSEFYDNVRTLKTVLTVDCPWL 357
           LIT N D    + F DN    KT+   +  WL
Sbjct: 824 LITCNEDSHIWTNFLDNASQNKTIFLQNYDWL 855


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,647
Number of Sequences: 5004
Number of extensions: 27301
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)