Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30049
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       31   0.25 
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.3  
SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 138 DAFVIVQEAGPVDRTRRPCRSQNCH 64
           D  +++Q+A PVDR R  C ++N H
Sbjct: 614 DGSIVIQKASPVDRGRYTCTARNSH 638



 Score = 29.9 bits (64), Expect = 0.76
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 129 VIVQEAGPVDRTRRPCRSQNCH 64
           +++Q+A PVDR R  C ++N H
Sbjct: 838 IVIQKASPVDRGRYTCTARNSH 859


>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 99  DLQALLLGRLQMHLRPPGRELEMYPGQRADPLAVRDTGVPV*NTILQRHLHR 254
           D+ A  + +  + LRPPGR     P +  D + V D+     N++ +R  HR
Sbjct: 42  DIVAKKMAKNLLRLRPPGRRQYAAPRRPTDVILVVDSS----NSLRRREFHR 89


>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 123 VQEAGPVDRTRRPCRSQNCHSG 58
           V E G + R RR C S++C +G
Sbjct: 108 VDENGKITRLRRECPSESCGAG 129


>SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 260 LWSM*VALKYGISNWNTGISYCEGI 186
           LWS+ +  K+ +    +G++YCE +
Sbjct: 441 LWSLDITKKHQLPRQQSGVTYCERV 465


>SB_15603| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 224 SNWNTGISYCEGICPLP 174
           SN+   ++YC   CPLP
Sbjct: 56  SNFRAAVAYCRHACPLP 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,802,380
Number of Sequences: 59808
Number of extensions: 227747
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)