Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30049
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17820.1 68414.m02206 expressed protein                             31   0.20 
At5g47430.1 68418.m05844 expressed protein                             28   1.9  
At5g41460.1 68418.m05035 fringe-related protein strong similarit...    28   2.5  
At4g17410.1 68417.m02607 expressed protein                             28   2.5  
At2g25920.1 68415.m03110 expressed protein                             27   3.3  
At3g20350.1 68416.m02578 expressed protein                             27   4.4  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    27   5.8  
At4g36440.1 68417.m05176 expressed protein                             26   7.6  
At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical ...    26   7.6  
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ...    26   7.6  
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein...    26   7.6  

>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 121 DDYKCISDHLAANSKCIPGRGQIPSQYEIPVFQFEIPY 234
           +D K  S H +++ KC PG+  +    ++P+F   + +
Sbjct: 266 EDRKTYSHHGSSSGKCFPGKNNMTDDTDVPIFSRSVSH 303


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 130 KCISDHLAANSKCIPGRGQIPSQYEIP 210
           KCI DH+ + S C+ GR  + +   +P
Sbjct: 319 KCIRDHIISKSMCVCGRSDVLADDLLP 345


>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 238 NATYIDHNL-ITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRT 378
           +ATY+ + L +  N   C+V  F   VR L  ++    P + F +N+T
Sbjct: 41  SATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQT 88


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 112 CFLDDY--KCISDHLAANSKCIPGRGQIPSQYEIP 210
           C L  Y  KCI DH+ A S C+ G   + +   +P
Sbjct: 222 CCLKSYCDKCIRDHIIAKSMCVCGATHVLADDLLP 256


>At2g25920.1 68415.m03110 expressed protein
          Length = 280

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 104 TGPASWTITNASPTTWPRTRNV-SRAEGRSPRSTRYRCSS 220
           T PAS  I+NA+ TT P++R   S  EGR P S    C S
Sbjct: 167 TCPASM-ISNAATTTTPQSRQRGSDTEGRFPSSPSDICHS 205


>At3g20350.1 68416.m02578 expressed protein 
          Length = 673

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 95  VRSTGPASWTITNASPTTWPRTRNVSRAEGRSPRSTRYRCSSL 223
           ++ TG ++ T T   P T P  R++ R   R P  TR R S +
Sbjct: 1   MKFTGKSNLTAT--LPATVPNIRDIHRRRARKPSFTRQRRSGV 41


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|Q9U7E0
            Transcriptional regulator ATRX homolog {Caenorhabditis
            elegans}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1261

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 205  IPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 372
            +P  Q      N+T I H ++T+  D  +    Y     L+  L    PWL   SN
Sbjct: 983  LPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSN 1038


>At4g36440.1 68417.m05176 expressed protein
          Length = 394

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 223 QTGTPVSRTARGSALCPGYISSSRPGGRRCICNRPRSRACR 101
           Q+   + RTA+ + +C         GG  CIC+  +   CR
Sbjct: 101 QSYDKLGRTAQVNIICGNCSDGRCKGGLGCICSVTQDSTCR 141


>At3g13870.2 68416.m01752 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 738

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 95  VRSTGPASWTITNASPTTWPRTRNVSRAEG 184
           V  +GP    +  A+  TWP  R + R EG
Sbjct: 399 VALSGPVEALLDGANDETWPAIRKLLRREG 428


>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
           root hair defective 3 (RHD3) GI:1839188 from
           [Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
          Length = 802

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 95  VRSTGPASWTITNASPTTWPRTRNVSRAEG 184
           V  +GP    +  A+  TWP  R + R EG
Sbjct: 463 VALSGPVEALLDGANDETWPAIRKLLRREG 492


>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 257

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 155 RTRNVSRAEGRSPRSTRYRCSSLKYH 232
           R+R+  R   RSPR  R R   + YH
Sbjct: 12  RSRSRDRFRSRSPRDRRMRSERVSYH 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,006
Number of Sequences: 28952
Number of extensions: 151831
Number of successful extensions: 403
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)