Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30043
         (733 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LQM3 Cluster: F5D14.12 protein; n=5; Magnoliophyta|Re...    33   9.5  

>UniRef50_Q9LQM3 Cluster: F5D14.12 protein; n=5; Magnoliophyta|Rep:
           F5D14.12 protein - Arabidopsis thaliana (Mouse-ear
           cress)
          Length = 384

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 648 GTCP--TNLLYGTSLQECHYIAPNDRDVIINRDRGNLGGRGTP*QSAVSV 505
           GTCP  TN  +  +++E     PN ++++   +    GG GTP  S V +
Sbjct: 103 GTCPYITNCNFAHTVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEI 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,138,414
Number of Sequences: 1657284
Number of extensions: 14110788
Number of successful extensions: 31076
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 30036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31067
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)