Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30043
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)         28   9.0  
SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -3

Query: 713 PIMQSVQTILLRAILS*SSKQLAPVPQIYCTALHYRNVIILHQMIEMLL 567
           P  + +  + L+ ++   +KQ  PV  ++C   H+ +VII+  +I  LL
Sbjct: 6   PSPKELLDVYLKTVIMSKTKQPTPVLHLFCHHYHHISVIIIAVIIITLL 54


>SB_17868| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.7e-36)
          Length = 592

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = -3

Query: 545 LAVGGRRDNQPSPSEHLH-----SSHTPDPLDIFNKKE 447
           L  G  +DN P+PS+ LH     SSH  D L + ++ +
Sbjct: 51  LEKGRAQDNDPNPSQRLHRMLFNSSHVRDALPMLDRSQ 88


>SB_45302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 732 LHSYEITNNAVCPNDITSRDFIVVEQTIGTCPT 634
           L +Y++TN+ +CP  + +   +V  QT+ T  T
Sbjct: 434 LRAYDLTNDVLCPYALMTLQTLVTFQTLMTLQT 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,748,456
Number of Sequences: 59808
Number of extensions: 469685
Number of successful extensions: 953
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)