Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30042
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical pr... 175 3e-44
U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical pr... 88 6e-18
U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical p... 58 7e-09
U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical p... 58 7e-09
U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical p... 43 2e-04
Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z82054-2|CAN86644.1| 316|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical pr... 28 6.6
CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical ... 27 8.7
>U97405-5|AAB53010.3| 444|Caenorhabditis elegans Hypothetical
protein T09B4.8 protein.
Length = 444
Score = 175 bits (425), Expect = 3e-44
Identities = 77/145 (53%), Positives = 106/145 (73%)
Frame = +2
Query: 149 QQVEQMKGVYMPPSITNAYKKPVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKV 328
Q+V+ ++ + +P YK +L+T+G Q+L+D++GK+YLD FGGIVTVSVGHCHPK+
Sbjct: 2 QRVQALRPL-LPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKI 60
Query: 329 NAALKDQLDVLWHTTNLYRHPKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKA 508
NAAL +Q LWHTT++Y IYEY E+L +K P LN V+ VNSGSEAN+LA LA+
Sbjct: 61 NAALTEQAQKLWHTTSIYHTEPIYEYAEKLLSKFPSKLNSVFFVNSGSEANDLALALARN 120
Query: 509 YTGNLDIISLQTSYHGYTSSLMGLT 583
YTG D+IS++ YHG T +++G T
Sbjct: 121 YTGRFDVISMRNGYHGMTQTVLGAT 145
>U80931-2|AAB37999.1| 467|Caenorhabditis elegans Hypothetical
protein T01B11.2a protein.
Length = 467
Score = 87.8 bits (208), Expect = 6e-18
Identities = 48/125 (38%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRH 388
P ++++ MQ+LYD ++LD + VGHCHPKV A+ QL T N+ +
Sbjct: 50 PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQLAT--STCNVRFVS 105
Query: 389 PKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAYTGNLDIISLQTSYHGYTSS 568
++ + EQ+ + LPG L+ V NSGSEAN+LA LA+ YT + D I ++ +YHG+ ++
Sbjct: 106 TQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLARDYTKHKDAIVIEHAYHGHVTT 164
Query: 569 LMGLT 583
M L+
Sbjct: 165 TMELS 169
>U80931-3|AAO91701.1| 160|Caenorhabditis elegans Hypothetical
protein T01B11.2b protein.
Length = 160
Score = 77.0 bits (181), Expect = 1e-14
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNL-YRH 388
P ++++ MQ+LYD ++LD + VGHCHPKV A+ QL T N+ +
Sbjct: 50 PFMVSRASMQYLYDEKSNKFLDCISNVQ--HVGHCHPKVVEAISKQLAT--STCNVRFVS 105
Query: 389 PKIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAYTGNLDIISLQTSYH 553
++ + EQ+ + LPG L+ V NSGSEAN+LA LA+ YT + D I ++ H
Sbjct: 106 TQLTDCAEQILSTLPG-LDTVLFCNSGSEANDLALRLARDYTKHKDAIVIEQLVH 159
>U41534-14|AAV34796.1| 226|Caenorhabditis elegans Hypothetical
protein C16A3.10c protein.
Length = 226
Score = 57.6 bits (133), Expect = 7e-09
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHP 391
PV L++G +++D +GK+Y D V+ GHCHPK+ +++Q L T+ + +
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTSRAFYNN 99
Query: 392 KIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAY 511
+ EY E+ KL + V +N+G EA E A LA+ +
Sbjct: 100 VLGEY-EEYVTKL-FKYDKVLPMNTGVEACESAVKLARRW 137
>U41534-13|AAD31050.2| 422|Caenorhabditis elegans Hypothetical
protein C16A3.10a protein.
Length = 422
Score = 57.6 bits (133), Expect = 7e-09
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTNLYRHP 391
PV L++G +++D +GK+Y D V+ GHCHPK+ +++Q L T+ + +
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKLLKVVQEQASTLTLTSRAFYNN 99
Query: 392 KIYEYVEQLAAKLPGDLNVVYLVNSGSEANELATLLAKAY 511
+ EY E+ KL + V +N+G EA E A LA+ +
Sbjct: 100 VLGEY-EEYVTKL-FKYDKVLPMNTGVEACESAVKLARRW 137
>U41534-12|AAM22027.1| 357|Caenorhabditis elegans Hypothetical
protein C16A3.10b protein.
Length = 357
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 212 PVLLTQGHMQWLYDNDGKRYLDLFGGIVTVSVGHCHPKVNAALKDQLDVLWHTTN 376
PV L++G +++D +GK+Y D V+ GHCHPK+ LKD V+ N
Sbjct: 40 PVALSKGEGCFVWDVEGKKYFDFLAAYSAVNQGHCHPKL---LKDNEAVVVFAEN 91
>Z73976-1|CAA98289.1| 324|Caenorhabditis elegans Hypothetical
protein T07C12.1 protein.
Length = 324
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 162 CSTCWYEGPVYGLGTKSVGGILAVLYVLTMSKHNFVPLLAISMCLSVEAIAICH 1
C CWY P++ + ++G L L V+ ++ F LAI +CL V I H
Sbjct: 261 CVLCWYS-PIFNI---NLGRGLNYLEVIALAAFPFCDPLAIILCLPVLRNRILH 310
>Z82054-2|CAN86644.1| 316|Caenorhabditis elegans Hypothetical
protein T26F2.3 protein.
Length = 316
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +2
Query: 233 HMQWLYDNDGKRYLDLF-GGIVTVSVGH-----C---HPKVNAALKDQLDVLWHTTNLYR 385
H +WL+ N K Y F G + T+ +G C K+ + ++DV W N
Sbjct: 205 HGKWLHWNSQKHYFQSFLGNVPTILIGRKDQNDCVYQVDKIKTSEIPKMDVKWKVQNCL- 263
Query: 386 HPKIYEYVEQLAAKLPGD 439
+++ + ++ +KLP D
Sbjct: 264 -AQLFTVLNKIMSKLPDD 280
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 98 KMPPTDFVPRPYTGPSYQQVEQMKGVYMPPSITNAYKKP 214
K+ P + P+ G YQQ++Q PP + NAY+ P
Sbjct: 204 KVHPMPYHPQMNKGNHYQQLQQYT---QPPPVYNAYQPP 239
>U39644-1|AAA80359.2| 393|Caenorhabditis elegans Hypothetical
protein T10E10.3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 172 SFHLFYLLVRRSRVRSGHEIRRRHFGRAVRSDDVEA*FCSSIS 44
SFH L R+R R R R + RSDDV A S+++
Sbjct: 197 SFHTCLLYYLRNRFRHFFPARTRSARNSTRSDDVPAPLLSNVT 239
>CU457741-1|CAM36342.1| 347|Caenorhabditis elegans Hypothetical
protein C42C1.1 protein.
Length = 347
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 150 WYEGPVYGLGTKSVGGILAV-LYVLTMSKHNFVPLLAIS 37
W+ G + G+G + GG+LA L ++ S ++ V LL +S
Sbjct: 135 WWIGIIIGIGLYTAGGLLAYSLAIVATSFYHTVFLLVLS 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,731,675
Number of Sequences: 27780
Number of extensions: 380703
Number of successful extensions: 1072
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -