Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   4.4  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    22   4.5  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    24   5.8  
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    24   7.6  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    24   7.6  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    24   7.6  

>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 215 PHPSNRNALLLHGRNRQGGGTYP 147
           PHP N   +LL G N Q   + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 146 RGLTRGPTTSDYANCNFAGLTFITR 72
           RG   G   S  A+CN +G+ FITR
Sbjct: 143 RGGKEGSVKS-CASCNGSGVKFITR 166



 Score = 20.6 bits (41), Expect(2) = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 164 GGGTYPRGLTRGP 126
           GGG +  G+ RGP
Sbjct: 92  GGGMFGGGMPRGP 104


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 253 DISLRSQYSYNGYPTLQTETHYCFTAEIGRAVVPTRA 143
           D+S  S YS    P +  +  YC +  I   VV  R+
Sbjct: 52  DLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRS 88


>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -2

Query: 261 HLEI*V*GLSIVTTATPPFKPKRITASRQK*AGRWYLPA 145
           HLE    GLS V T +P F+ ++   SR   A  W L A
Sbjct: 210 HLEALALGLSRVYTISPAFRAEQSHTSRHL-AEFWMLEA 247


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 211 WGSRCNYTETLNLYLKMGGAFT 276
           +GSRC +   LNL+ K    FT
Sbjct: 77  YGSRCGFWRILNLFKKHKVPFT 98


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 253 DISLRSQYSYNGYPTLQTETHYCFTAEIGRAVVPTRA 143
           D+S  S YS    P L  +  YC +  I   VV  R+
Sbjct: 52  DLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,879
Number of Sequences: 5004
Number of extensions: 28946
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)