Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30041
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         28   2.3  
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    27   3.9  
05_06_0154 + 26024022-26024031,26024217-26024459,26024642-26024658     27   5.2  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    26   9.1  
01_06_1749 - 39636951-39638102                                         26   9.1  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 212 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTS 117
           H ++    LL GR R GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 220 GYPTLQTETHYCFTAEIGRAVVPTR-ADSQEVLPPVITQI 104
           GY  L   TH    AE+   V+ TR A +QE+L  ++  +
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLLKPV 245


>05_06_0154 + 26024022-26024031,26024217-26024459,26024642-26024658
          Length = 89

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -3

Query: 266 PPILRYKF--KVSV*LQRLPHPSNRNALLLHG-RNRQGGGTYPRGLTRGPTTSDYANC 102
           PPI + ++   V + +Q   HP      L HG    +G G  P  L RGP    Y  C
Sbjct: 29  PPINKAEYIANVVISMQSYSHPPYTGPALGHGPHGNEGDGLGP-DLARGPCLKLYEYC 85


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 182 HGRNRQGGGTYPRGLTRGPTTSDY 111
           HG+ R+GG   PRG T     S Y
Sbjct: 18  HGQQRRGGSPPPRGRTTSVYRSGY 41


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 234 SIVTTATPPFKPKRITASRQK*AGRWYLPARTHK 133
           S+ + A PPF P RIT+      GR +  +   K
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAFFVSVARK 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,061
Number of Sequences: 37544
Number of extensions: 214499
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)