Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30039
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 33 0.22
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 33 0.22
07_03_1344 - 25912639-25914060 31 0.67
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 1.2
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 30 2.1
03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639 28 6.3
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 28 8.3
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 28 8.3
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 28 8.3
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 227 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 391
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 227 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 391
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386
>07_03_1344 - 25912639-25914060
Length = 473
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 92 DAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGV 235
+AG A+ S VR ++A + Q ++ L TG+T GE+GV
Sbjct: 244 EAGIGAIASQLADRLPAGSVRLNSRAAAIGQSSVTLDTGETVSGELGV 291
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 392 IANFSQTSPNVSELDFPLYQPLCEFFSHPRPSH 294
++ +SQTSPN S P Y P +S P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797
>01_01_0953 -
7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 443 INQYSMPKYFLSDYGRAVDIIKRIDSPNL-RLMLDIFHLQQIAGDITHNIT-KLLAIHWD 616
IN Y+ P + + +A+ + ++P L + ++ + + IAG I H IT +L+ I +
Sbjct: 559 INPYAQP--IVQNLSKALSFPESYENPYLMKCLMRVLGIANIAGQIVHEITARLVGILME 616
Query: 617 MC 622
+C
Sbjct: 617 VC 618
>03_05_0795 + 27783813-27785246,27785339-27785591,27786377-27786639
Length = 649
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 552 IFSKSLATLLIILRNYWPYIGTC 620
+ ++SL L+ L NY+PY+ TC
Sbjct: 85 VAARSLQALVAFLTNYFPYLHTC 107
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 62 SILERYALAKDAG-FKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLK 202
++ E+ + +D+G FK ++SGF GFS + V S L + + K
Sbjct: 870 TVKEKASACRDSGIFKELKSGFSSGFSSDVVTKFSASPELNKYGLEHK 917
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 595 FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHS-SSIITQEIFGHRILVDW 440
F I SN + + N ++++ +WT N VH+ S++T + G +L D+
Sbjct: 53 FLTIYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARRSVVTLQKDGAMVLKDY 105
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 100 SSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 5
+ +FS S++ G + KH+R ++ FH K+
Sbjct: 145 TKLFSDSLANHEGEKWVKHRRILNPAFHLEKL 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,684
Number of Sequences: 37544
Number of extensions: 355370
Number of successful extensions: 933
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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