Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30039
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10080.1 68417.m01649 expressed protein                             31   0.74 
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   1.7  
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ...    28   5.2  
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    28   6.9  
At2g16860.1 68415.m01939 GCIP-interacting family protein similar...    28   6.9  
At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR cla...    28   6.9  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    28   6.9  
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    27   9.2  
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa...    27   9.2  

>At4g10080.1 68417.m01649 expressed protein
          Length = 325

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
 Frame = +2

Query: 53  EASSILERYALAKD---AGFKAVESGFPFGFSLE---QVRNAKQ---SAGLQQIAINLKT 205
           E+SS+++   +  D   A  + +ESG+   F ++   +  N  +    +GL Q +++   
Sbjct: 26  ESSSVIDDGMILSDHFSATDRVIESGYFDSFRVDYGSECLNPGEVSVDSGLDQFSVSQSG 85

Query: 206 GDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAG-KVENPTPKHWETFEK 382
            D  + E GV      E     +    +   +A + K +   A  ++   T  H+ET  +
Sbjct: 86  DDCVRNEFGVYD---SETGILGDGEVRLSDFEAANEKYVESEAATELTGGTVSHYET--E 140

Query: 383 NLLYAVDVLKGENIQGLIEPINQYS 457
           NL   VD   GEN  G+ EPI   S
Sbjct: 141 NLEEFVDGRHGENESGVEEPIEDSS 165


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 83  LAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGD---TTKGEVGVTSVPGK 253
           ++KD G+K+ E G   G S  +     +  G + + +     D    +  E  VT +PGK
Sbjct: 647 VSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGK 706

Query: 254 EDE 262
             E
Sbjct: 707 SSE 709


>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
           DREB2A GI:3738230 from [Arabidopsis thaliana] ;
           supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
          Length = 335

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +2

Query: 359 KHW-ETFEKNLLYAVDVLKG---ENIQGLIEPINQYSMPKYFLSDYGRAVDIIK-RIDSP 523
           KHW   FE N  Y  D+LK    +  QG++E   Q       ++DYG   D+ +  +DS 
Sbjct: 199 KHWLSEFEHN--YWSDILKEKEKQKEQGIVETCQQQQQDSLSVADYGWPNDVDQSHLDSS 256

Query: 524 NL 529
           ++
Sbjct: 257 DM 258


>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 94  VFSQSISFQNGRSFSKHKRQISTEFHYNKI 5
           +F+  ++   G  +SKH++ I+  FH  K+
Sbjct: 139 LFATGVALYEGEKWSKHRKIINPSFHLEKL 168


>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
           GCIP-interacting protein mp29 (GI:27372623) [Mus
           musculus]; similar to GCIP-interacting protein P29
           (GI:11967379) [Homo sapiens]
          Length = 298

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 344 ENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQ 451
           + PTP  W+ F +  LY     + +NIQ  +E  N+
Sbjct: 169 KEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNR 204


>At1g61300.1 68414.m06909 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/72 (25%), Positives = 34/72 (47%)
 Frame = +2

Query: 470 FLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLAIHWDMCK*LRFRIVT 649
           ++ D     +II +  + NL  +     L+++   I +N+ KL +I+W      R  I+ 
Sbjct: 653 YIEDSREVGEIINKEKATNLTSITPFLKLERL---ILYNLPKLESIYWSPLHFPRLLIIH 709

Query: 650 SPDTPRRDKLQI 685
             D P+  KL +
Sbjct: 710 VLDCPKLRKLPL 721


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 242 VPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLYAVDVLKGEN 421
           VPG+ D  K + N T      L   K+H     V +      ET   N +Y  ++++  N
Sbjct: 28  VPGRSDSPKAHQNQTTNQTVFLKPAKVHDDDEDVSSEDEN--ETHNSNAVYYKEMIRKSN 85

Query: 422 IQ---GLIEPINQYS 457
            +    +++P ++Y+
Sbjct: 86  AELEPSVLDPRDEYT 100


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 290 EYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLY 394
           EY    D  K + +  K+E PTP+ + +  + ++Y
Sbjct: 209 EYMHIADRDKCNWLRDKIETPTPRQYNSERRMVIY 243


>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 332

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -1

Query: 103 KSSVFSQSISFQNGRSFSKHKRQISTE 23
           KS   ++S+S ++ +S +KHKRQ +T+
Sbjct: 237 KSQDLTESLSDESSKSDAKHKRQYATD 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,693
Number of Sequences: 28952
Number of extensions: 309622
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)